diff --git a/docs/_config.yml b/docs/_config.yml
index 35ed5ac..5d1cb19 100644
--- a/docs/_config.yml
+++ b/docs/_config.yml
@@ -1,8 +1,8 @@
theme: jekyll-theme-slate
-site_name: LogosJ
+site_name: LogoJS
repo_name: logojs-package
repo_url: https://www.github.com/weng-lab/logojs-package
-site_description: "LogosJ Javascript sequence logos"
+site_description: "LogoJS Javascript sequence logos"
site_author: Henry Pratt
remote_branch: master
diff --git a/docs/alphabet.md b/docs/alphabet.md
index c416e8d..7397aa4 100644
--- a/docs/alphabet.md
+++ b/docs/alphabet.md
@@ -2,7 +2,7 @@
## Alphabet overview
-LogosJ combines sets of individual glyphs into alphabets. An alphabet is an array of **symbols**,
+LogoJS combines sets of individual glyphs into alphabets. An alphabet is an array of **symbols**,
each of which should have a unique color and glyph combination. Symbols are not restricted to
just one glyph; if you are rendering a dinucleotide logo, for example, you might use symbols with
two glyphs each. Alphabets can also have multiple symbols that use the same glyph with different
@@ -18,17 +18,17 @@ letter, a single value may be used in place of an array.
* **component** an array of components used to render the glyphs in this symbol. Should be the
same length as **color**. If your alphabet uses custom glyphs, import your custom glyph
components and use them here. If the symbol is only one letter, a single component may be used
-in place of an array. If you are only using letters and digits which are built in to LogosJ, you
-can use the **regex** field instead, and LogosJ will populate this field for you using the
+in place of an array. If you are only using letters and digits which are built in to LogoJS, you
+can use the **regex** field instead, and LogoJS will populate this field for you using the
`loadGlyphComponents` function.
* **regex** a string representing the sequence of letters in this symbol. This field is not
required, but may be used as a shorthand rather than explicitly including components in the
-**component** field. LogosJ will populate the **components** field for you automatically with
+**component** field. LogoJS will populate the **components** field for you automatically with
matching built-in letters and digits if you leave it empty.
## Built-in alphabets
-LogosJ provides built-in alphabets for common use cases for convenience. If you need to render
+LogoJS provides built-in alphabets for common use cases for convenience. If you need to render
a custom logo with these symbol sets, you can import these alphabets rather than build them
yourself. In React, these can be imported directly from the `logojs` package; without React, they
are accessible under the `logojs` namespace (i.e. `logojs.DNAAlphabet`).
@@ -50,7 +50,7 @@ with different symbols.
## Custom alphabets
To make a custom alphabet, simply create a custom array of symbol objects as described above.
-If you have custom React components for custom glyphs not built-in to LogosJ, you can include
+If you have custom React components for custom glyphs not built-in to LogoJS, you can include
them in the **components** field. The following is an example of a custom alphabet with **M**
and **W** representing methylated **CpG** on the plus and minus strands (the syntax below
first includes the core of the `DNAAlphabet`, then extends it with **M** and **W**):
@@ -67,12 +67,12 @@ export const METHYL_ALPHABET = loadGlyphComponents([
## Alphabet utilities
-LogosJ provides two utility functions to make generating custom alphabets easier in particular
+LogoJS provides two utility functions to make generating custom alphabets easier in particular
use cases.
The `loadGlyphComponents` function reads the optional **regex** field of each symbol in a
custom alphabet and automatically populates the corresponding **component** field with built-in
-glyphs from LogosJ. If a symbol has a **component** field already but has no **regex** field,
+glyphs from LogoJS. If a symbol has a **component** field already but has no **regex** field,
it will be left unchanged; however, if it has a **regex** field and a **components** field the
contents of the **components** field will be overwritten. The regex field must only contain the
letters A-Z and a-z and the digits 0-9. The function takes the following argument:
diff --git a/docs/custom.md b/docs/custom.md
index f2de573..44d17f5 100644
--- a/docs/custom.md
+++ b/docs/custom.md
@@ -2,7 +2,7 @@
## Overview
-LogosJ supports a wide array of customizations for logos. You can use custom alphabets, make
+LogoJS supports a wide array of customizations for logos. You can use custom alphabets, make
logos where some letters extend below the x-axis, or take advantage of SVG components to layer
on custom annotations. Several advanced React components are available offering varying degrees
of customization.
@@ -118,7 +118,7 @@ takes the following arguments:
## Logos without axes
-Logos do not need to be rendered with the default, built-in axes. LogosJ provides a `RawLogo` component
+Logos do not need to be rendered with the default, built-in axes. LogoJS provides a `RawLogo` component
which just renders glyphs. A `RawLogo` component does not render its own `