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app
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db
doc Added new color scheme document.
lib
public
script
spec Remove dead karma tags spec
vendor Install FasterCSV.
.gitignore
.rvmrc
Capfile Update deployment recipes.
Gemfile
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README.rdoc Update readme for new installs.
Rakefile Allow specjour tasks to be excluded if the gem isn't present.
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README.rdoc

Lifeviz

Copyright © 2011 Marine Biological Laboratory.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

July 21 2011

Clean install with a database dump
  1. clone/update server repository
  2. create new database "lifeviz_development"
  3. import dump (long time... like 30m-1hr) or slim_dump (10 seconds)
     $gunzip -c db/dump.sql.gz | psql lifeviz_development
  4. rake db:migrate (Just in case the database dump is a little old.)
  5. get into psql
     $psql lifeviz_development
  6. run vacuum (5mins)
     #vacuum analyze;
  7. run Species.rebuild_stats (NOT NEEDED FOR SLIM)
  8. run Taxon.rebuild_stats (NOT NEEDED FOR SLIM)
  9. script/server

July 22, 2011

Clean Install from scratch
  1. rake db:create:all
  3. rake db:schema:load
  4. run db:seed (~4hrs)
      - this process completely sets up the database with all of the taxonomy and lifespan data, builds lineages for navigating the taxonomy, and creates statistics on everything.
  12. script/server
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