Issues

• Error in xtfrm.data.frame(x) : cannot xtfrm data frames

  wguo-research/scCancer#49 · Filter by author zaozaozaonan opened on Jul 15, 2025
  1

• why do intersect before runharmony ?

  wguo-research/scCancer#48 · Filter by author GGanakin opened on Jan 6, 2025

• What kind of expression matrix is required when using the 'runStemness' function?

  wguo-research/scCancer#47 · Filter by author PrudFortS opened on Nov 28, 2024

• Error for runScAnnotation

  wguo-research/scCancer#46 · Filter by author ZhishenJ opened on Sep 29, 2024

• liger dependency error

  wguo-research/scCancer#45 · Filter by author nicholas-middelberg opened on Jun 28, 2024
  3

• Two doubts, could you please clarify. One, I didn't get plot related with Ambient RNAs contamination fraction estimation. I run the program based on the sample data(KC data) provided in the tutorial. The second doubt is I got some warning messages, after running the scAnnotation module, which is given below

  wguo-research/scCancer#44 · Filter by author SaleenaYounus opened on Apr 11, 2024
  3

• Error in xtfrm.data.frame(x) : cannot xtfrm data frames

  wguo-research/scCancer#43 · Filter by author zongfl opened on Feb 27, 2024
  3

• about python module for malignant cell detection mentioned in scCancer2

  wguo-research/scCancer#42 · Filter by author xflicsu opened on Feb 16, 2024
  1

• ERROR

  wguo-research/scCancer#41 · Filter by author mabaoweireadingene opened on Aug 31, 2023
  1

• Spatial transcriptomic data compatibilty?

  wguo-research/scCancer#40 · Filter by author rajeha opened on Jan 26, 2023
  1

• Error in base::colSums(x, na.rm = na.rm, dims = dims, ...) : 'x' must be an array of at least two dimensions

  wguo-research/scCancer#39 · Filter by author shuaifengwang opened on Jan 17, 2023

• How to set the parameters to generate pdf files?

  wguo-research/scCancer#38 · Filter by author xxz19900 opened on Jan 16, 2023

• Issues about scCombination

  wguo-research/scCancer#37 · Filter by author Tianqi-Ma opened on Jan 7, 2022

• Analysis of "cellranger multi" output

  wguo-research/scCancer#36 · Filter by author HeyLifeHD opened on Nov 25, 2021

• Malignant cell threshold？ （malign.thres <- getBimodalThres(scores = obserScore.smooth)？）

  wguo-research/scCancer#35 · Filter by author kkk0-000 opened on Oct 29, 2021

• error message during runScAnnotation process "runCellInteraction"

  wguo-research/scCancer#34 · Filter by author wulc21 opened on Sep 1, 2021
  2

• scCancer installation

  wguo-research/scCancer#33 · Filter by author Charlesyip2016 opened on Jul 22, 2021

• Dear developers of scCancer, error in Run scAnnotation: [2021-04-25 21:26:54] START: RUN scAnnotation - Warning in 'prepareSeurat': Cannot find the raw data, and use the filtered data instead. [2021-04-25 21:26:54] -----: data preparation Error in .rowNamesDF<-(x, value = value) : missing values in 'row.names' are not allowed

  wguo-research/scCancer#32 · Filter by author Yiquan-Jiang opened on Apr 26, 2021

• issues with RUN scAnnotation

  wguo-research/scCancer#31 · Filter by author AteeqMKhaliq opened on Apr 13, 2021
  8

• Most difficult to Install

  wguo-research/scCancer#30 · Filter by author AteeqMKhaliq opened on Apr 13, 2021

• About ambient genes

  wguo-research/scCancer#29 · Filter by author evenDDDDD opened on Apr 9, 2021
  1

• install error

  wguo-research/scCancer#28 · Filter by author l-magnificence opened on Mar 10, 2021
  4

• problem with runMalignancy（）

  wguo-research/scCancer#27 · Filter by author MMriran opened on Mar 5, 2021

• question about runExprProgram（)

  wguo-research/scCancer#26 · Filter by author MMriran opened on Dec 29, 2020
  1

• Cannot install package using R version = 4.0.3

  wguo-research/scCancer#25 · Filter by author rrchai opened on Dec 19, 2020
  1