Version Log

2.2.1 (2020.03.02)

• Update the codes to be compatible with Seurat (v4.0.0).
• Update some details of the help documentation.

2.2.0 (2020.12.10)

• Add generate10Xdata function, which can generate a 10X-like data folder based on expression matrix and gene information.
• Update the codes to be compatible with SoupX (v1.4.8).
• Add the parameters harmony.theta, harmony.lambda, harmony.sigma to the runScCombination function.
• Provide more detailed installation instruction.
• Update some details of reports.

2.1.0 (2020.05.09)

• Add Harmony and LIGER algorithms to scCombination.
• Add runSurvival function.

2.0.0 (2020.03.02)

• Add SoupX ambient RNAs contamination analyses.
• Add doublet scores estimation.
• Add UMAP low-dimension visualization.
• Update some details of cell malignancy estimation.
• Add cell-cell interaction analyses.
• Add multi-samples data integration analyses.
• Update the codes to be compatible with multi-modal data.
• Refine some details of reports.
• Fix some bugs.

1.0.0 (2019.10.07)

• Implement main functions of scStatistics and scAnnotation.