scStateDynamics is a computational method to thoroughly decipher the tumor cell state dynamics in response to drug treatment by modeling single-cell level expression changes.
- Python version: >= 3.7
The scStateDynamics python package can be installed directly via pip:
pip install scStateDynamics
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The example data used in this tutorial can be downloaded from here.
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The step-by-step tutorials are available in the tutorial directory](https://github.com/wguo-research/scStateDynamics/blob/main/tutorial/scStateDynamics_tutorial.ipynb).
MIT
Wenbo Guo, Xinqi Li, Dongfang Wang, Nan Yan, Qifan Hu, Fan Yang, Xuegong Zhang, Jianhua Yao, Jin Gu. scStateDynamics: deciphering the drug-responsive tumor cell state dynamics by modeling single-cell level expression changes. Genome Biology 25, 297 (2024). https://doi.org/10.1186/s13059-024-03436-y