-
Notifications
You must be signed in to change notification settings - Fork 1
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Download "clean" FCS files #19
Comments
Need to add the original compensation matrix, if present, to the cleaned FCS file. This is usually stored in the $SPILL metadata key/value. |
Added original spillover matrix in 1c4e697 But, the $PnR values need to be set differently to match the original files. A lot of cytometers use 262144 for this value. I'll calculate the max value and set all $PnR values to 262144 if the true max is below that value. If the true value is above, I'll use the real max value. |
feature completed in 424718e |
Implement downloading of FCS files with ReFlow channel annotations. This allows a project user to export all the files with a common set of channel names. Also, create a file name convention for the "clean" files that is consistent and contains useful metadata about the file such as the site code, subject code, etc.
The text was updated successfully, but these errors were encountered: