diff --git a/.github/workflows/continuous-integration.yml b/.github/workflows/continuous-integration.yml index b56899ae46..abfb5520da 100644 --- a/.github/workflows/continuous-integration.yml +++ b/.github/workflows/continuous-integration.yml @@ -25,6 +25,10 @@ jobs: uses: actions/setup-python@v2 with: python-version: ${{ matrix.python-version }} + - name: Install Poetry + uses: abatilo/actions-poetry@v2.0.0 + with: + poetry-version: 1.1.5 - name: Install Protoc uses: arduino/setup-protoc@master with: @@ -37,12 +41,9 @@ jobs: restore-keys: | ${{ runner.os }}-pip- - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install tox tox-gh-actions pytest pytest-cov coverage - - name: Test with tox - run: | - make test-all + run: make install + - name: Run tests + run: make test-system-python - name: Coveralls Parallel if: ${{matrix.os == 'ubuntu-latest'}} env: diff --git a/.github/workflows/push_release.yml b/.github/workflows/push_release.yml index 3463ec74b2..77befcf663 100644 --- a/.github/workflows/push_release.yml +++ b/.github/workflows/push_release.yml @@ -17,13 +17,11 @@ jobs: with: python-version: '3.x' - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install setuptools wheel twine + run: make install - name: Build and publish env: TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }} TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} run: | - python setup.py sdist bdist_wheel + make dist twine upload dist/* diff --git a/.github/workflows/test-notebook.yml b/.github/workflows/test-notebook.yml index 3b4cf20138..affd7bb490 100644 --- a/.github/workflows/test-notebook.yml +++ b/.github/workflows/test-notebook.yml @@ -9,7 +9,7 @@ on: jobs: test: runs-on: ${{ matrix.os }} - + strategy: fail-fast: false max-parallel: 6 @@ -25,6 +25,10 @@ jobs: uses: actions/setup-python@v2 with: python-version: ${{ matrix.python-version }} + - name: Install Poetry + uses: abatilo/actions-poetry@v2.0.0 + with: + poetry-version: 1.1.5 - name: Install Protoc uses: arduino/setup-protoc@master with: @@ -37,10 +41,7 @@ jobs: restore-keys: | ${{ runner.os }}-pip- - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install -r requirements-test.txt + run: make install - name: Run notebook test - run: | - pytest --no-cov test_notebooks/notebook_tests.py - + run: make test-notebooks + diff --git a/.gitignore b/.gitignore index 70c290f5da..e92143d9fe 100644 --- a/.gitignore +++ b/.gitignore @@ -143,4 +143,9 @@ cython_debug/ #MacOS -.DS_Store \ No newline at end of file +.DS_Store + +# Misc +/output # default location of the whylogs binary output + +requirements.txt \ No newline at end of file diff --git a/.travis.yml b/.travis.yml index 3886da9604..e4249d3faf 100644 --- a/.travis.yml +++ b/.travis.yml @@ -14,7 +14,7 @@ matrix: - env: DISTRIB="conda" PYTHON_VERSION="3.7" COVERAGE="false" install: - source tests/travis_install.sh - - pip install -r requirements.txt + - make install # ^ DEPRECATION WARNING: # The automatic creation of a `requirements.txt` file is deprecated. # See `Dependency Management` in the docs for other options. diff --git a/Makefile b/Makefile index 345184f4ad..d49ac69256 100644 --- a/Makefile +++ b/Makefile @@ -1,67 +1,102 @@ -.PHONY: clean clean-test clean-pyc clean-build docs help -.DEFAULT_GOAL := help +src.python := $(shell find ./src -type f -name "*.py") +tst.python := $(shell find ./tests -type f -name "*.py") +src.python.pyc := $(shell find ./src -type f -name "*.pyc") +src.proto.dir := ./proto/src +src.proto := $(shell find $(src.proto.dir) -type f -name "*.proto") -define BROWSER_PYSCRIPT -import os, webbrowser, sys +dist.dir := dist +egg.dir := .eggs +build.dir := build +# This isn't exactly true but its the only thing that we easily know the name of at this point. Its a good proxy for +# the wheel since its created along with it. +build.wheel := $(dist.dir)/whylogs-0.4.5.dev1.tar.gz +build.proto.dir := src/whylogs/proto +build.proto := $(patsubst $(src.proto.dir)/%.proto,$(build.proto.dir)/%_pb2.py,$(src.proto)) -from urllib.request import pathname2url +default: dist -webbrowser.open("file://" + pathname2url(os.path.abspath(sys.argv[1]))) -endef -export BROWSER_PYSCRIPT +release: + # Run format checker + # Run dist -define PRINT_HELP_PYSCRIPT -import re, sys +github: + # TODO -for line in sys.stdin: - match = re.match(r'^([a-zA-Z_-]+):.*?## (.*)$$', line) - if match: - target, help = match.groups() - print("%-20s %s" % (target, help)) -endef -export PRINT_HELP_PYSCRIPT +.PHONY: dist clean clean-test help format lint test install coverage docs default proto test-notebooks github release test-system-python -BROWSER := python -c "$$BROWSER_PYSCRIPT" +ifeq (, $(shell which poetry)) + $(error "Can't find poetry on the path. Install it at https://python-poetry.org/docs.") +endif help: @python -c "$$PRINT_HELP_PYSCRIPT" < $(MAKEFILE_LIST) -clean: clean-build clean-pyc clean-test ## remove all build, test, coverage and Python artifacts - -clean-build: ## remove build artifacts - rm -fr build/ - rm -fr dist/ - rm -fr .eggs/ - rm -fr src/whylogs/proto/*pb2.py - find . -name '*.egg-info' -exec rm -fr {} + - find . -name '*.egg' -exec rm -f {} + - -clean-pyc: ## remove Python file artifacts - find . -name '*.pyc' -exec rm -f {} + - find . -name '*.pyo' -exec rm -f {} + - find . -name '*~' -exec rm -f {} + - find . -name '__pycache__' -exec rm -fr {} + +clean: clean-test ## Remove all build artifacts + rm -rf $(dist.dir) + rm -rf $(build.dir) + rm -f $(src.python.pyc) + rm -rf $(egg.dir) + rm -rf $(build.proto) + rm -f $(build.proto) + rm -f requirements.txt -clean-test: ## remove test and coverage artifacts +clean-test: ## Remove test and coverage artifacts rm -fr .tox/ rm -f .coverage rm -fr htmlcov/ rm -fr .pytest_cache +dist: $(build.wheel) ## Create distribution tarballs and wheels + +$(build.wheel): $(src.python) $(build.proto) + @$(call i, Generating distribution files) + poetry build + @$(call i, Distribution files created) + @find dist -type f + +proto: $(build.proto) + +requirements.txt: + @$(call i, Generating a requirements.txt file from poetry) + poetry export -f requirements.txt --output requirements.txt --dev + +$(build.proto): $(src.proto) + @$(call i, Generating python source for protobuf) + protoc -I $(src.proto.dir) --python_out=$(build.proto.dir) $(src.proto) + poetry run 2to3 --nobackups --write ./src/whylogs/proto/ + lint: ## check style with flake8 - tox -e flake8 + @$(call i, Running the linter) + poetry run tox -e flake8 + +format: ## format source code with black + @$(call i, Running the formatter) + poetry run black . -test: build-proto ## run tests quickly with the default Python - pytest +test: dist ## run tests with pytest + @$(call i, Running tests) + poetry run pytest -test-all: build-proto ## run tests on every Python version with tox - tox +test-system-python: dist ## Run tests using the system `python` instead of the locally declared poetry python + @$(call i, Running tests using the globally installed python) + python -m poetry run python --version + python -m poetry run pytest -coverage: ## check code coverage quickly with the default Python - pytest --cov='src/.' tests/ - python -m coverage report +test-notebooks: ## Run tests for the notebooks + @$(call i, Running notebook tests) + poetry run pytest --no-cov test_notebooks/notebook_tests.py -docs: build-proto ## generate Sphinx HTML documentation, including API docs +install: ## install all dependencies with poetry + @$(call i, Installing dependencies) + poetry install + +coverage: ## generate test coverage reports + @$(call i, Generating test coverage) + poetry run pytest --cov='src/.' tests/ + poetry run python -m coverage report + +docs: proto ## generate Sphinx HTML documentation, including API docs + @$(call i, Generating docs) rm -f docs/whylogs.rst rm -f docs/modules.rst cd docs @@ -69,26 +104,42 @@ docs: build-proto ## generate Sphinx HTML documentation, including API docs $(MAKE) -C docs html $(BROWSER) build/sphinx/html/index.html -servedocs: docs ## compile the docs watching for changes - watchmedo shell-command -p '*.rst' -recursive -c '$(MAKE) -C docs' -D . -release: dist ## package and upload a release - twine upload dist/* +define BROWSER_PYSCRIPT +import os, webbrowser, sys -dist: clean-build build-proto ## builds source and wheel package - python setup.py build - python setup.py sdist - python setup.py bdist_wheel - ls -l dist +from urllib.request import pathname2url -install: build-proto clean ## install the package to the active Python's site-packages - python setup.py install +webbrowser.open("file://" + pathname2url(os.path.abspath(sys.argv[1]))) +endef +export BROWSER_PYSCRIPT +BROWSER := python -c "$$BROWSER_PYSCRIPT" -build-proto: - python setup.py proto +define PRINT_HELP_PYSCRIPT +import re, sys -build: build-proto lint - python setup.py build +for line in sys.stdin: + match = re.match(r'^([a-zA-Z_-]+):.*?## (.*)$$', line) + if match: + target, help = match.groups() + print("%-20s %s" % (target, help)) +endef +export PRINT_HELP_PYSCRIPT -develop: build-proto - python setup.py develop \ No newline at end of file +define i +echo +echo "[INFO] $1" +echo +endef + +define w +echo +echo "[WARN] $1" +echo +endef + +define e +echo +echo "[ERROR] $1" +echo +endef diff --git a/examples/requirements.txt b/examples/requirements.txt deleted file mode 100644 index 79dfe98d8a..0000000000 --- a/examples/requirements.txt +++ /dev/null @@ -1,6 +0,0 @@ -boto3 -certifi -chardet -matplotlib -numpy -whylogs==0.1.10 diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000000..ab9bd4cfbb --- /dev/null +++ b/poetry.lock @@ -0,0 +1,3191 @@ +[[package]] +name = "2to3" +version = "1.0" +description = "Adds the 2to3 command directly to entry_points." +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "alembic" +version = "1.4.1" +description = "A database migration tool for SQLAlchemy." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.dependencies] +Mako = "*" +python-dateutil = "*" +python-editor = ">=0.3" +SQLAlchemy = ">=1.1.0" + +[[package]] +name = "appdirs" +version = "1.4.4" +description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "appnope" +version = "0.1.2" +description = "Disable App Nap on macOS >= 10.9" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "argparse" +version = "1.4.0" +description = "Python command-line parsing library" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "async-generator" +version = "1.10" +description = "Async generators and context managers for Python 3.5+" +category = "dev" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "atomicwrites" +version = "1.4.0" +description = "Atomic file writes." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "attrs" +version = "20.3.0" +description = "Classes Without Boilerplate" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"] +docs = ["furo", "sphinx", "zope.interface"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] + +[[package]] +name = "aws-sam-translator" +version = "1.35.0" +description = "AWS SAM Translator is a library that transform SAM templates into AWS CloudFormation templates" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +boto3 = ">=1.5,<2.0" +jsonschema = ">=3.2,<4.0" +six = ">=1.15,<2.0" + +[package.extras] +dev = ["coverage (>=5.3,<6.0)", "flake8 (>=3.8.4,<3.9.0)", "tox (>=3.20.1,<3.21.0)", "pytest-cov (>=2.10.1,<2.11.0)", "pylint (>=1.7.2,<2.0)", "pyyaml (>=5.3.1,<5.4.0)", "mock (>=3.0.5,<4.0.0)", "parameterized (>=0.7.4,<0.8.0)", "click (>=7.1,<8.0)", "dateparser (>=0.7,<1.0)", "requests (>=2.24.0,<2.25.0)", "docopt (>=0.6.2,<0.7.0)", "pathlib2 (>=2.3.5)", "pytest (>=4.6.11,<4.7.0)", "pytest (>=6.1.1,<6.2.0)", "black (==20.8b1)"] + +[[package]] +name = "aws-xray-sdk" +version = "2.7.0" +description = "The AWS X-Ray SDK for Python (the SDK) enables Python developers to record and emit information from within their applications to the AWS X-Ray service." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +botocore = ">=1.11.3" +future = "*" +wrapt = "*" + +[[package]] +name = "azure-core" +version = "1.13.0" +description = "Microsoft Azure Core Library for Python" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +requests = ">=2.18.4" +six = ">=1.11.0" + +[[package]] +name = "azure-storage-blob" +version = "12.8.0" +description = "Microsoft Azure Blob Storage Client Library for Python" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +azure-core = ">=1.10.0,<2.0.0" +cryptography = ">=2.1.4" +msrest = ">=0.6.18" + +[[package]] +name = "backcall" +version = "0.2.0" +description = "Specifications for callback functions passed in to an API" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "black" +version = "20.8b1" +description = "The uncompromising code formatter." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +appdirs = "*" +click = ">=7.1.2" +mypy-extensions = ">=0.4.3" +pathspec = ">=0.6,<1" +regex = ">=2020.1.8" +toml = ">=0.10.1" +typed-ast = ">=1.4.0" +typing-extensions = ">=3.7.4" + +[package.extras] +colorama = ["colorama (>=0.4.3)"] +d = ["aiohttp (>=3.3.2)", "aiohttp-cors"] + +[[package]] +name = "bleach" +version = "3.3.0" +description = "An easy safelist-based HTML-sanitizing tool." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.dependencies] +packaging = "*" +six = ">=1.9.0" +webencodings = "*" + +[[package]] +name = "boto" +version = "2.49.0" +description = "Amazon Web Services Library" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "boto3" +version = "1.17.53" +description = "The AWS SDK for Python" +category = "main" +optional = false +python-versions = ">= 2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" + +[package.dependencies] +botocore = ">=1.20.53,<1.21.0" +jmespath = ">=0.7.1,<1.0.0" +s3transfer = ">=0.3.0,<0.4.0" + +[[package]] +name = "botocore" +version = "1.20.53" +description = "Low-level, data-driven core of boto 3." +category = "main" +optional = false +python-versions = ">= 2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" + +[package.dependencies] +jmespath = ">=0.7.1,<1.0.0" +python-dateutil = ">=2.1,<3.0.0" +urllib3 = ">=1.25.4,<1.27" + +[package.extras] +crt = ["awscrt (==0.10.8)"] + +[[package]] +name = "bump2version" +version = "1.0.1" +description = "Version-bump your software with a single command!" +category = "dev" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "certifi" +version = "2020.12.5" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "cffi" +version = "1.14.5" +description = "Foreign Function Interface for Python calling C code." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +pycparser = "*" + +[[package]] +name = "cfn-lint" +version = "0.48.2" +description = "Checks CloudFormation templates for practices and behaviour that could potentially be improved" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.dependencies] +aws-sam-translator = ">=1.34.0" +jsonpatch = {version = "*", markers = "python_version != \"3.4\""} +jsonschema = ">=3.0,<4.0" +junit-xml = ">=1.9,<2.0" +networkx = {version = ">=2.4,<3.0", markers = "python_version >= \"3.5\""} +pyyaml = {version = "*", markers = "python_version != \"3.4\""} +six = ">=1.11" + +[[package]] +name = "chardet" +version = "4.0.0" +description = "Universal encoding detector for Python 2 and 3" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[[package]] +name = "click" +version = "7.1.2" +description = "Composable command line interface toolkit" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[[package]] +name = "cloudpickle" +version = "1.6.0" +description = "Extended pickling support for Python objects" +category = "main" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "colorama" +version = "0.4.4" +description = "Cross-platform colored terminal text." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[[package]] +name = "coverage" +version = "5.5" +description = "Code coverage measurement for Python" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" + +[package.extras] +toml = ["toml"] + +[[package]] +name = "cryptography" +version = "3.4.7" +description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +cffi = ">=1.12" + +[package.extras] +docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"] +docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"] +pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"] +sdist = ["setuptools-rust (>=0.11.4)"] +ssh = ["bcrypt (>=3.1.5)"] +test = ["pytest (>=6.0)", "pytest-cov", "pytest-subtests", "pytest-xdist", "pretend", "iso8601", "pytz", "hypothesis (>=1.11.4,!=3.79.2)"] + +[[package]] +name = "cycler" +version = "0.10.0" +description = "Composable style cycles" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = "*" + +[[package]] +name = "databricks-cli" +version = "0.14.3" +description = "A command line interface for Databricks" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +click = ">=6.7" +requests = ">=2.17.3" +six = ">=1.10.0" +tabulate = ">=0.7.7" + +[[package]] +name = "decorator" +version = "5.0.7" +description = "Decorators for Humans" +category = "dev" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "defusedxml" +version = "0.7.1" +description = "XML bomb protection for Python stdlib modules" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[[package]] +name = "docker" +version = "5.0.0" +description = "A Python library for the Docker Engine API." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +pywin32 = {version = "227", markers = "sys_platform == \"win32\""} +requests = ">=2.14.2,<2.18.0 || >2.18.0" +websocket-client = ">=0.32.0" + +[package.extras] +ssh = ["paramiko (>=2.4.2)"] +tls = ["pyOpenSSL (>=17.5.0)", "cryptography (>=3.4.7)", "idna (>=2.0.0)"] + +[[package]] +name = "ecdsa" +version = "0.14.1" +description = "ECDSA cryptographic signature library (pure python)" +category = "dev" +optional = false +python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" + +[package.dependencies] +six = "*" + +[[package]] +name = "entrypoints" +version = "0.3" +description = "Discover and load entry points from installed packages." +category = "main" +optional = false +python-versions = ">=2.7" + +[[package]] +name = "et-xmlfile" +version = "1.0.1" +description = "An implementation of lxml.xmlfile for the standard library" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "fastparquet" +version = "0.5.0" +description = "Python support for Parquet file format" +category = "main" +optional = false +python-versions = ">=3.6," + +[package.dependencies] +numba = ">=0.49" +numpy = ">=1.11" +pandas = ">=1.1.0" +thrift = ">=0.11.0" + +[package.extras] +brotli = ["brotli"] +lz4 = ["lz4 (>=0.19.1)"] +lzo = ["python-lzo"] +snappy = ["python-snappy"] +zstandard = ["zstandard"] +zstd = ["zstd"] + +[[package]] +name = "flask" +version = 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-[build-system] -requires = ["setuptools>=42", "wheel"] -build-backend = "setuptools.build_meta" +[tool.poetry] +name = "whylogs" +version = "0.4.5-dev1" +description = "Profile and monitor your ML data pipeline end-to-end" +authors = ["Anthony Naddeo "] + +[tool.poetry.dependencies] +python = ">=3.7.1,<3.10" +click = ">=7.1.2" +python-dateutil = ">=2.8.1" +protobuf = ">=3.15.5" +pyyaml = ">=5.3.1" +pandas = "^1.2.4" +marshmallow = ">=3.7.1" +numpy = "1.19.3" +whylabs-client = "@>=0.1" +whylabs-datasketches = ">=2.2.0b1" +boto3 = ">=1.14.1" +botocore = ">=1.17.44" +smart-open = ">=4.1.2" +xlrd = "^2.0.1" +openpyxl = "==3.0.6" +puremagic = "@1.10" +tqdm = "==4.54.0" +matplotlib = "3.3.3" +mlflow = "1.13.1" +sklearn = "^0.0" +pyarrow = "^3.0.0" +llvmlite = "^0.36.0" +fastparquet = "^0.5.0" -[tool.black] -line-length = 160 -target-version = ['py37'] -include = '\.pyi?$' -exclude = ''' +[tool.poetry.dev-dependencies] +sklearn = "^0.0" +pytest = "6.1.2" +Pillow = "^8.2.0" +pytest-cov = 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-pluggy==0.13.1 -pre-commit==2.9.2 -prometheus-client==0.9.0 -prometheus-flask-exporter==0.18.1 -prompt-toolkit==3.0.8 -protobuf==3.15.6 -ptyprocess==0.6.0 -py==1.10.0 -pyarrow==2.0.0 -pycparser==2.20 -Pygments==2.7.4 -pyparsing==2.4.7 -pytest==6.1.2 -pytest-cov==2.10.1 -pytest-runner==5.3 -python-dateutil==2.8.1 -python-editor==1.0.4 -pytz==2020.4 -PyYAML==5.4 -pyzmq==20.0.0 -querystring-parser==1.2.4 -readme-renderer==28.0 -regex==2020.11.13 -requests==2.25.0 -requests-oauthlib==1.3.0 -requests-toolbelt==0.9.1 -rfc3986==1.4.0 -s3transfer==0.3.3 -setuptools-black==0.1.5 -six==1.15.0 -smmap==3.0.4 -SQLAlchemy==1.3.20 -sqlparse==0.4.1 -tabulate==0.8.7 -toml==0.10.2 -tornado==6.1 -tqdm==4.54.0 -traitlets==5.0.5 -twine==3.2.0 -typed-ast==1.4.1 -typing-extensions==3.7.4.3 -urllib3==1.26.4 -virtualenv==20.2.1 -wcwidth==0.2.5 -webencodings==0.5.1 -websocket-client==0.57.0 -Werkzeug==1.0.1 -whylabs-client==0.1 -whylabs-datasketches==2.2.0b1 -zipp==3.4.0 -puremagic == 1.10 -xlrd==2.0.1 -openpyxl==3.0.6 -tqdm==4.54.0 -smart-open==4.1.2 diff --git a/requirements-test.txt b/requirements-test.txt deleted file mode 100644 index 46d8c84d45..0000000000 --- a/requirements-test.txt +++ /dev/null @@ -1,36 +0,0 @@ -boto3==1.16.63 -botocore==1.19.63 -certifi==2020.12.5 -click==8.0.0a1 -fsspec==0.8.5 -jmespath==0.10.0 -marshmallow==3.10.0 -matplotlib==3.3.3 -numpy==1.19.4 -pandas==1.1.4;python_version < '3.7' -pandas==1.2.1;python_version > '3.7' -protobuf==3.15.6 -python-dateutil==2.8.1 -pytz==2020.5 -PyYAML==5.4 -s3fs==0.4.2 -s3transfer==0.3.4 -six==1.15.0 -urllib3==1.26.4 -coverage==5.4 -whylabs-client==0.1 -whylabs-datasketches==2.2.0b1 -freezegun==1.1.0 -moto==1.3.16 -scikit-learn==0.24.1 -Pillow==8.1.1 -moto==1.3.16 -pytest-cov>=2.11.1 -mlflow==1.13.1 -puremagic ==1.10 -xlrd==2.0.1 -openpyxl==3.0.6 -smart-open==4.1.2 -tqdm==4.54.0 -nbconvert==6.0.7 -ipykernel==5.3.4 \ No newline at end of file diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 6c1c12386e..0000000000 --- a/requirements.txt +++ /dev/null @@ -1,23 +0,0 @@ -boto3==1.16.63 -botocore==1.19.63 -certifi==2020.12.5 -click==8.0.0a1 -fsspec==0.8.5 -jmespath==0.10.0 -marshmallow==3.10.0 -numpy==1.19.5 -pandas==1.1.4 -protobuf==3.15.6 -python-dateutil==2.8.1 -pytz==2020.5 -PyYAML==5.4 -s3transfer==0.3.3 -six==1.15.0 -urllib3==1.26.4 -whylabs-client==0.1 -whylabs-datasketches==2.2.0b1 -xlrd==2.0.1 -openpyxl==3.0.6 -puremagic == 1.10 -smart-open==4.1.2 -tqdm==4.54.0 diff --git a/setup.py b/setup.py deleted file mode 100644 index eded24e07d..0000000000 --- a/setup.py +++ /dev/null @@ -1,71 +0,0 @@ -# -*- coding: utf-8 -*- -""" - Setup file for whylogs_python. - Use setup.cfg to configure your project. -""" - -import subprocess -import sys - -import os.path -from distutils.command.clean import clean as _clean -from distutils.spawn import find_executable -from distutils.util import run_2to3 -from glob import glob -from pkg_resources import VersionConflict, require -from setuptools import setup - -try: - require("setuptools>=38.3") -except VersionConflict: - print("Error: version of setuptools is too old (<38.3)!") - sys.exit(1) - -# Find the Protocol Compiler. -if "PROTOC" in os.environ and os.path.exists(os.environ["PROTOC"]): - protoc = os.environ["PROTOC"] -elif os.path.exists("../src/protoc"): - protoc = "../src/protoc" -elif os.path.exists("../src/protoc.exe"): - protoc = "../src/protoc.exe" -elif os.path.exists("../vsprojects/Debug/protoc.exe"): - protoc = "../vsprojects/Debug/protoc.exe" -elif os.path.exists("../vsprojects/Release/protoc.exe"): - protoc = "../vsprojects/Release/protoc.exe" -else: - protoc = find_executable("protoc") - - -def generate_proto(sr_path, dst_path): - """Invokes the Protocol Compiler to generate a _pb2.py from the given - .proto file. - Also, run 2to3 conversion to make the package compatible with Python 3 code.""" - proto_files = glob("{0}/*.proto".format(sr_path)) - if len(proto_files) == 0: - sys.stderr.write("Unable to locate proto source files") - sys.exit(-1) - - protoc_command = [ - protoc, - "-I", - sr_path, - "--python_out={}".format(dst_path), - ] + proto_files - if protoc is None: - sys.stderr.write("protoc is not installed nor found in ../src. Please compile it " "or install the binary package.\n") - sys.exit(-1) - - print(" ".join(protoc_command)) - if subprocess.call(protoc_command) != 0: - sys.exit(-1) - - run_2to3(glob("{0}/*_pb2.py".format(dst_path))) - - -class BuildProto(_clean): - def run(self): - generate_proto("./proto/src", "src/whylogs/proto") - - -if __name__ == "__main__": - setup(cmdclass={"proto": BuildProto}) diff --git a/src/whylogs/core/image_profiling.py b/src/whylogs/core/image_profiling.py index 4dc3d51b38..8927caff6a 100644 --- a/src/whylogs/core/image_profiling.py +++ b/src/whylogs/core/image_profiling.py @@ -1,5 +1,5 @@ import logging -from typing import Optional, Callable, List, Dict +from typing import Callable, List, Dict, Union from whylogs.features.transforms import Hue, Saturation, Brightness @@ -61,7 +61,7 @@ def __init__(self, img: ImageType = None, feature_transforms: List[Callable] = DEFAULT_IMAGE_FEATURES, feature_name: str = "", - metadata_attributes: Optional[List[str]] = _METADATA_DEFAULT_ATTRIBUTES, + metadata_attributes: Union[str, List[str]] = _METADATA_DEFAULT_ATTRIBUTES, ): if filepath is None and img is None: diff --git a/tests/unit/core/test_image_profiling.py b/tests/unit/core/test_image_profiling.py index f9e41a147d..8322c461f7 100644 --- a/tests/unit/core/test_image_profiling.py +++ b/tests/unit/core/test_image_profiling.py @@ -13,17 +13,11 @@ def test_track_image(): - from whylogs.proto import InferredType - - Type = InferredType.Type - now = datetime.datetime.utcnow() shared_session_id = uuid4().hex num_image_features = len(_IMAGE_FEATURES) num_metadata_features = len(_METADATA_DEFAULT_ATTRIBUTES) - - test_image_path = os.path.join( - TEST_DATA_PATH, "images", "flower2.jpg") + test_image_path = os.path.join(TEST_DATA_PATH, "images", "flower2.jpg") total_default_features = num_image_features + num_metadata_features profile_1 = DatasetProfile(name="test", @@ -33,23 +27,20 @@ def test_track_image(): metadata={"key": "x1"},) trackImage = TrackImage(test_image_path) + pixels_per_image = 67500 trackImage(profile_1) columns = profile_1.columns assert len(columns) == total_default_features - assert columns["Saturation"].number_tracker.count == 67500 + assert columns["Saturation"].number_tracker.count == pixels_per_image assert columns["BitsPerSample"].counters.count == 3 - trackImage = TrackImage(test_image_path, metadata_attributes="all") + trackImage = TrackImage(test_image_path) trackImage(profile_1) columns = profile_1.columns - assert len(columns) == total_default_features+11 - assert columns["Saturation"].number_tracker.count == 2*67500 + assert len(columns) == total_default_features + assert columns["Saturation"].number_tracker.count == 2 * pixels_per_image def test_track_PIL_img(): - from whylogs.proto import InferredType - - Type = InferredType.Type - now = datetime.datetime.utcnow() shared_session_id = uuid4().hex num_image_features = len(_IMAGE_FEATURES) diff --git a/tox.ini b/tox.ini deleted file mode 100644 index 3fd08c643b..0000000000 --- a/tox.ini +++ /dev/null @@ -1,34 +0,0 @@ -# Tox configuration file -# Read more under https://tox.readthedocs.org/ -# THIS SCRIPT IS SUPPOSED TO BE AN EXAMPLE. MODIFY IT ACCORDING TO YOUR NEEDS! - -[tox] -envlist =py36, py37, py38, py39, flake8 - - -[testenv] -deps = -rrequirements-test.txt -relative_files = True -setenv = - PYTHONPATH = {toxinidir} - TOXINIDIR = {toxinidir} -passenv = GITHUB_* -usedevelop = True -extras = - all - testing -commands = pytest --cov=src --cov-report term-missing --cov-report xml --verbose - -[testenv:flake8] -basepython = python -skip_install = true -deps = flake8 -commands = - flake8 src tests - -[gh-actions] -python = - 3.6: py36 - 3.7: py37, flake8 - 3.8: py38 - 3.9: py39