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1_NORMAL_TUMOR
2_GTEX_TISSUE
3_CLUSTERING
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src
README.md
figures.R
install.R
run_all.R
vars.R

README.md

DivergenceAnalysis

Required packages: devtools, tidyr, ClusterR, kernlab, plyr, knitr, ggplot2, grid, gridExtra, cowplot, RColorBrewer, ggrepel, superheat, rpart.plot

Instructions:

  1. Download the data from http://luigimarchionni.org/divergence.html. Install the required packages.

  2. Run install.R script to install the following package from the github repositority: github.com/wikum/divergence

  3. Set the DATA_DIR variable in vars.R to the DATA folder containing the data downloaded in step 1

  4. Run run_all.R to run experiments and create figures