• Source for wilkelab.org website

    HTML 5 3 Updated Sep 24, 2018
  • Shell Updated Sep 6, 2018
  • R 323 58 Updated Aug 18, 2018
  • Data and code for Smith et al., Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon-Altered tRNA Pools, mBio 2018

    Python Updated Jun 28, 2018
  • An implementation of the Grammar of Graphics in R

    R 2 1,253 GPL-2.0 Updated May 2, 2018
  • R package for the analysis of single cell virology growth curves

    HTML Updated Jan 22, 2018
  • R 1 Updated Feb 26, 2017
  • Code and data for Brown et al., Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions

    Jupyter Notebook 1 Updated Aug 30, 2016
  • Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)

    HyPhy 1 Updated Aug 24, 2016
  • Python 8 5 Updated Mar 25, 2016
  • Code and data for Jackson et al., Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins, Protein Science, in press.

    Python 1 Updated Jan 2, 2016
  • Python 1 Updated Oct 8, 2015
  • HyPhy 5 1 Updated Jun 22, 2015
  • Code and data for Echave et al., Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites, Phys. Biol. 12:025002, 2015.

    Python Updated May 22, 2015
  • Code and data for PPI simulation part of Kachroo et al., Systematic humanization of yeast genes reveals conserved functions and genetic modularity. Science 348:921–925, 2015

    R 2 1 Updated May 22, 2015
  • R Updated May 12, 2015
  • Brainfuck 5 1 Updated May 5, 2015
  • RNA-seq pipeline for E. coli starvation time course

    Python Updated Dec 10, 2014
  • TeX 1 Updated Nov 20, 2014
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