Skip to content

will-rowe/thor

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

18 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

thor-logo

Transforming Hashed Otus to Rgba


travis

Under active development...


Overview

THOR is a tool that will generate PNG images from genomic data, for use in machine learning applications.

So far, it will:

  • histosketch a bunch of FASTA files, creating a set of HULK histosketches
  • colour these histosketches to RGB values, so that each sketch of length x will be encoded into x RGB values
  • build a PNG image from an OTU table where each row of pixels corresponds to a coloured histosketch

It's a work in progress, but we've had some success in using these images in Neural Nets to classify the Human Microbiome Project 16S samples by body site.

ToDo

When an OTU is not present in the refseq collection, it is ignored by THOR. This needs to be handled properly.

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages