Galaxy tools for metabolomics

Purpose

This repository aims to gather tools and contributors from the metabolomics world.

It is maintained by the Workflow4Metabolomics project but open to any contributors.

Tools themselves should stick with the IUC (Galaxy Intergalactic Utilities Commission) standards and best practices

Workflow4Metabolomics

The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data.

Related open source projects

Galaxy

Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.

Dependencies using Conda

Conda is a package, dependency and environment management for any language—Python, R, Ruby, Lua, Scala, Java, JavaScript, C/ C++, FORTRAN, and more.

Planemo

Planemo is a command-line utilities to assist in developing Galaxy

Other informations

Job Dynamic Destination Mapping

Some tools implement a Job Dynamic Destination Mapping, like xcmsSet

Historic contributors (non cited by GitHub)

• Urszula Czerwinska ABiMS / IFB - CNRS/Sorbonne Université - Station Biologique de Roscoff - France
• Marion Landi PFEM / MetaboHUB - INRA - France
• Misharl Monsoor @mmonsoor - ABiMS / IFB - CNRS/Sorbonne Université - Station Biologique de Roscoff - France
• Pierre Pericard @ppericard- ABiMS / IFB - CNRS/Sorbonne Université - Station Biologique de Roscoff - France