From 6345633d0cacd9deb18f7fbfaf6dc2a1b6894335 Mon Sep 17 00:00:00 2001
From: Kevin Lewis <kl2@sanger.ac.uk>
Date: Mon, 12 Feb 2024 17:57:23 +0000
Subject: [PATCH] update Changes for release 0.39.0

---
 Changes | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/Changes b/Changes
index 5ade7976..ab3c64aa 100644
--- a/Changes
+++ b/Changes
@@ -1,6 +1,10 @@
 CHANGES LOG
 -----------
 
+0.39.0
+ - use "samtools index" instead of "cram_index to create cram indexes
+ - for bam and cram index creation, use "samtools index -o <index_file>" to explicitly indicate the index file
+
 0.38.0
  - add additional autosome specific coverage threshold to final_output_prep.json