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Convert MIRA Assembly Format (MAF) to Sequence Alignment/Map (SAM) format
Python

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Tests/tags4sam
README
maf2fasta.py
maf2sam.py

README

This is a simple Python script designed to covert from the MIRA
Assembly Format (MAF) to Sequence Alignment/Map (SAM) format.

MAF: http://mira-assembler.sourceforge.net/docs/chap_maf_part.html
SAM: http://samtools.sourceforge.net/

It was first publicly released on 30 September 2010 on the MIRA
project's mailing list:

http://www.freelists.org/post/mira_talk/Paired-end-info-SAMBAM-output-from-MIRA,13

The source code repository for this script is here:

https://github.com/peterjc/maf2sam

The script requires Biopython to be installed, see http://biopython.org
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