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autogen.mk autogen.mk is a makefile provided to automatically update the GNU autotools build system. It will run Bakefile, aclocal, and autoconf as appropriate. The .m4 files required for running aclocal are located in build/aclocal. When upgrading software that wxWidgets depends on (for example, Bakefile, cppunit, GTK, SDL, or others) it is advisable to upgrade the .m4 files located in the build/aclocal directory. It is particularly important that if you use a newer version of Bakefile to generate the Makefile.in files that you use the newer bakefile*.m4. Because build/autogen.mk is a Makefile it will automatically rerun aclocal and autoconf as necessary whenever any m4 in build/aclocal is newer than the generated aclocal.m4. You can achieve this simply by copying the new bakefile*.m4 files from PREFIX/share/aclocal/ into the build/aclocal/ directory and rerunning make -f build/autogen.mk. Note that you should _not_ preserve source file times (don't use cp -p) or else it's possible your .m4 files will be older than the generated aclocal.m4). Example: cp /usr/share/aclocal/bakefile*.m4 build/aclocal/ make -f build/autogen.mk Please don't forget to commit updated .m4 files as well as updated aclocal.m4, configure, and Makefile.in files to wxWidgets.