diff --git a/drivers/pci/controller/pci-aardvark.c b/drivers/pci/controller/pci-aardvark.c
index ee6ffba2af220..d2c01c6e6815b 100644
--- a/drivers/pci/controller/pci-aardvark.c
+++ b/drivers/pci/controller/pci-aardvark.c
@@ -1693,6 +1693,27 @@ static int advk_pcie_remove(struct platform_device *pdev)
 	val &= ~(PCI_COMMAND_IO | PCI_COMMAND_MEMORY | PCI_COMMAND_MASTER);
 	advk_writel(pcie, val, PCIE_CORE_CMD_STATUS_REG);
 
+	/* Disable MSI */
+	val = advk_readl(pcie, PCIE_CORE_CTRL2_REG);
+	val &= ~PCIE_CORE_CTRL2_MSI_ENABLE;
+	advk_writel(pcie, val, PCIE_CORE_CTRL2_REG);
+
+	/* Clear MSI address */
+	advk_writel(pcie, 0, PCIE_MSI_ADDR_LOW_REG);
+	advk_writel(pcie, 0, PCIE_MSI_ADDR_HIGH_REG);
+
+	/* Mask all interrupts */
+	advk_writel(pcie, PCIE_MSI_ALL_MASK, PCIE_MSI_MASK_REG);
+	advk_writel(pcie, PCIE_ISR0_ALL_MASK, PCIE_ISR0_MASK_REG);
+	advk_writel(pcie, PCIE_ISR1_ALL_MASK, PCIE_ISR1_MASK_REG);
+	advk_writel(pcie, PCIE_IRQ_ALL_MASK, HOST_CTRL_INT_MASK_REG);
+
+	/* Clear all interrupts */
+	advk_writel(pcie, PCIE_MSI_ALL_MASK, PCIE_MSI_STATUS_REG);
+	advk_writel(pcie, PCIE_ISR0_ALL_MASK, PCIE_ISR0_REG);
+	advk_writel(pcie, PCIE_ISR1_ALL_MASK, PCIE_ISR1_REG);
+	advk_writel(pcie, PCIE_IRQ_ALL_MASK, HOST_CTRL_INT_STATUS_REG);
+
 	/* Remove IRQ domains */
 	advk_pcie_remove_msi_irq_domain(pcie);
 	advk_pcie_remove_irq_domain(pcie);