Lucas Sinclair xapple

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@limno
xapple pushed to master at limno/gefes
@xapple
xapple pushed to master at limno/gefes
@xapple
xapple pushed to master at limno/gefes
@xapple
xapple pushed to master at limno/gefes
@xapple
  • @xapple 47cd17d
    Prokka uses the UK spelling...
xapple pushed to master at limno/gefes
@xapple
xapple pushed to master at limno/gefes
@xapple
  • @xapple ccb1345
    Add center option to prokka
@xapple
Please rename your contigs or use --centre XXX to generate clean contig names
xapple commented on issue tseemann/prokka#96
@xapple

This is still a problem in prokka 1.11

@xapple
Unix binary provided doesn't work (wrong GLIBC)
xapple pushed to master at limno/gefes
@xapple
@xapple
  • @xapple 4a6d8e3
    So the StringIO module changed name in python 3
xapple commented on issue biopython/biopython#594
@xapple

So the test I wrote failed apparently because of this: File "/home/travis/build/biopython/biopython/Tests/test_Entrez.py", line 4212, in test_trunc…

@xapple
xapple commented on issue biopython/biopython#594
@xapple

OK I did it. It's in pull request #595

xapple opened pull request biopython/biopython#595
@xapple
Resolve issue #594
2 commits with 14 additions and 1 deletion
@xapple
  • @xapple 563769f
    Added a test for issue #594
@xapple
  • @xapple c4bc40c
    Fix TypeError instead of CorruptedXMLError
xapple commented on issue biopython/biopython#594
@xapple

Obviously the XML is bad, that's why it's in a variable called bad_xml, but you still have a bad bug. My except Bio.Entrez.Parser.CorruptedXMLError

@xapple
Bad XML in Entrez should raise CorruptedXMLError
@xapple
  • @xapple 4034032
    Seperate seqenv output dir
@xapple
xapple pushed to master at xapple/fasta
@xapple
  • @xapple 97ea28b
    Add seqs to fasta in batch
@xapple
@xapple
@xapple
@xapple
xapple pushed to master at limno/gefes
@xapple
  • @xapple 044fc5a
    Updating count numbers for under_ice_rerun projects json
xapple pushed to master at limno/gefes
@xapple
  • @xapple ca28532
    Updating count numbers for under_ice_rerun projects
xapple pushed to master at limno/gefes
@xapple