Skip to content
develop
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
bin
 
 
 
 
 
 
 
 
 
 
 
 
 
 

README.md

Genome Weaver - A Toolkit for Genome Sciences

  • align - FM-index based Aligner
  • lens - Data format reader (FASTA,FASTQ,BED,WIG,GFF,SAM/BAM,etc.)

Install

$ make install

Default installation folder is $HOME/local/bin/genome-weaver

Building BWT index

$ JVM_OPT="-Xmx=32g" genome-weaver bwt hg19.fa 

Single-end alignment

$ genome-weaver align -r hg19.fa (fastq file)  > (sam file)

Paired-end alignment

(soon)

Configure your Git

$ git confgi core.eol lf
$ git config core.autocrlf input

About

Toolkit for genome sciences

Resources

Releases

No releases published
You can’t perform that action at this time.