Error loading hapmap and vcf files

[PaulineSnor]

Hello,

How can I adress this error ?

Error in hapmap_parser_map(hmp_file[1], out) :
ERROR: Wrong HAPMAP file, no line begin with "rs#".

The first line of my file starts with rs# so I do not really know what the probem is...

I also tried to load my VCF file but I had another error despite having of course a line starting with #CHROM.

Error in vcf_parser_map(vcf_file = vcf_file, out = out) :
ERROR: Wrong VCF file, no line begin with "#CHROM".

Thanks,

Pauline

[NikeeShrestha]

Did you find the solution for this?

[PaulineSnor]

No I just ended up using GAPIT package instead. Cheers

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________________________________ De : Nikee Shrestha ***@***.***> Envoyé : lundi 27 février 2023 23:51 À : xiaolei-lab/rMVP ***@***.***> Cc : Pauline Hessenauer ***@***.***>; Author ***@***.***> Objet : Re: [xiaolei-lab/rMVP] Error loading hapmap and vcf files (#63) Did you find the solution for this? — Reply to this email directly, view it on GitHub<#63 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ATI3CISOE5P2JWPM6E5FOKDWZV75JANCNFSM4ZLE6YNQ>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[jdavis-132]

For future reference: this error is solved by changing the headers to match those given in the example code. For vcf files, this is 6 lines beginning with '##' prior to the line with '#CHROM'.

[PaulineSnor]

Oh ok, thanks !

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________________________________ De : jdavis-132 ***@***.***> Envoyé : mardi 14 mars 2023 16:10 À : xiaolei-lab/rMVP ***@***.***> Cc : Pauline Hessenauer ***@***.***>; Author ***@***.***> Objet : Re: [xiaolei-lab/rMVP] Error loading hapmap and vcf files (#63) For future reference: this error is solved by changing the headers to match those given in the example code. For vcf files, this is 6 lines beginning with '##' prior to the line with '#CHROM'. — Reply to this email directly, view it on GitHub<#63 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ATI3CIRRXTVAZ3B6WPBAMGLW4DGELANCNFSM4ZLE6YNQ>. You are receiving this because you authored the thread.Message ID: ***@***.***>