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tweak aux files

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xuanxu committed Aug 3, 2011
1 parent 22a221c commit 8bbdea3adf3ee243e96ab8f35c78bf4ce4018487
Showing with 1,051 additions and 7 deletions.
  1. +8 −0 .travis.yml
  2. +5 −0 Gemfile
  3. +26 −0 Gemfile.lock
  4. +7 −0 Rakefile
  5. +1 −1 lib/nimbus/application.rb
  6. +4 −6 spec/fixtures/config.yml
  7. +200 −0 spec/fixtures/testing_regression.data
  8. +800 −0 spec/fixtures/training_regression.data
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@@ -0,0 +1,8 @@
+rvm:
+ - 1.8.7
+ - 1.9.2
+ - rbx
+ - rbx-2.0
+ - ree
+ - jruby
+ - ruby-head
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@@ -0,0 +1,5 @@
+source :rubygems
+
+gemspec
+
+gem 'rake'
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@@ -0,0 +1,26 @@
+PATH
+ remote: .
+ specs:
+ nimbus (0.1)
+
+GEM
+ remote: http://rubygems.org/
+ specs:
+ diff-lcs (1.1.2)
+ rake (0.8.7)
+ rspec (2.6.0)
+ rspec-core (~> 2.6.0)
+ rspec-expectations (~> 2.6.0)
+ rspec-mocks (~> 2.6.0)
+ rspec-core (2.6.4)
+ rspec-expectations (2.6.0)
+ diff-lcs (~> 1.1.2)
+ rspec-mocks (2.6.0)
+
+PLATFORMS
+ ruby
+
+DEPENDENCIES
+ nimbus!
+ rake
+ rspec (>= 2.5.0)
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@@ -0,0 +1,7 @@
+require 'bundler'
+require 'rspec/core/rake_task'
+
+Bundler::GemHelper.install_tasks
+
+RSpec::Core::RakeTask.new(:spec)
+task :default => :spec
@@ -80,7 +80,7 @@ def output_training_file_predictions(forest)
f.write("#{p[0]} #{p[1]}\n")
}
}
- Nimbus.message "* Predictions for the training individuals saved to:"
+ Nimbus.message "* Predictions for the training sample saved to:"
Nimbus.message "* Output forest file: #{@config.output_training_file}"
Nimbus.message "*" * 50
end
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@@ -1,14 +1,12 @@
#Input files
input:
- training: Rtraining.h40
- testing: Rtesting.h40
+ training: training_regression.data
+ testing: testing_regression.data
#Forest parameters
forest:
- forest_size: 500 #how many trees
+ forest_size: 10 #how many trees
SNP_sample_size_mtry: 60 #mtry
SNP_total_count: 200
max_branches: 2000
- node_min_size: 5
- loss_function_discrete: 2
- loss_function_cont: 2
+ node_min_size: 5

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