A graphic MATLAB program for single molecule RNA FISH
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BW_multithreshstack.m
Imagem.manual.doc
LOG_filter.m
README.md
all_channel_names.m
auto_thresholding.m
calculate_file_threshold_function.m
cell_count_normalization.m
counting_dots.m
enhance_image.m
find_background_dots.m
get_cell_labels.m
gui_crop_stack_poly.m
imagem.fig
imagem.m
imagem.m~
inpoly.m
panel.fig
panel.m
parse_stack.m
plot_all_cell.m
plot_all_dot.m
plot_pairwise.m
readme.txt
reorder_cells.m
set_cell_label.m
threshold_selection.m
threshold_selection.m~
tiffread2.m
tutorial.m
which_cell.m
zprojection.m

README.md

ImageM

A graphic MATLAB program for single molecule RNA FISH

Reference:

Anna Lyubimova, Shalev Itzkovitz, Jan Philipp Junker, Zi Peng Fan, Xuebing Wu, Alexander van Oudenaarden Single-molecule mRNA detection and counting in mammalian tissue Nature Protocols, 2013, 8:1743–1758