{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":456959889,"defaultBranch":"main","name":"killifish-hypoxia-RRBS","ownerLogin":"yaaminiv","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-02-08T14:10:38.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/22335838?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1644329439.3006148","currentOid":""},"activityList":{"items":[{"before":"1db17a54997e47bd740755b9dfebe578e7564265","after":"89119b5e850182685ccad47364e0673c35c13982","ref":"refs/heads/main","pushedAt":"2024-05-23T17:44:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"calculate avg meth across comparisons","shortMessageHtmlLink":"calculate avg meth across comparisons"}},{"before":"825e5ccfd448b398899e811f676c8ffb2ec3b5de","after":"1db17a54997e47bd740755b9dfebe578e7564265","ref":"refs/heads/main","pushedAt":"2024-05-23T17:40:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"bedgraph with avg methyalation across common loci","shortMessageHtmlLink":"bedgraph with avg methyalation across common loci"}},{"before":"350c5c930d8c04a6c3ca23f9668d24df2b931e7a","after":"825e5ccfd448b398899e811f676c8ffb2ec3b5de","ref":"refs/heads/main","pushedAt":"2024-05-23T13:55:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"mis1 DMR","shortMessageHtmlLink":"mis1 DMR"}},{"before":"27b8a1106851e58814c756e8179cedb77b52eac5","after":"350c5c930d8c04a6c3ca23f9668d24df2b931e7a","ref":"refs/heads/main","pushedAt":"2024-05-23T13:54:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"comparisons with new genome","shortMessageHtmlLink":"comparisons with new genome"}},{"before":"814f875c31e06d619b5a481b6226039573a564e8","after":"27b8a1106851e58814c756e8179cedb77b52eac5","ref":"refs/heads/main","pushedAt":"2024-05-23T13:51:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"path to missing_1 files","shortMessageHtmlLink":"path to missing_1 files"}},{"before":"15a466425d48332eed3d65a0a4beee3140400f60","after":"814f875c31e06d619b5a481b6226039573a564e8","ref":"refs/heads/main","pushedAt":"2024-05-23T13:36:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"rm extraneous files","shortMessageHtmlLink":"rm extraneous files"}},{"before":"87e5d2a9676926b45f6f5432933d35cb7ac31e31","after":"15a466425d48332eed3d65a0a4beee3140400f60","ref":"refs/heads/main","pushedAt":"2024-05-23T13:23:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"output from running summarize allowing for one missing locus per group","shortMessageHtmlLink":"output from running summarize allowing for one missing locus per group"}},{"before":"2fe55d73e07bf8fb18e972fc689d671079d75e50","after":"87e5d2a9676926b45f6f5432933d35cb7ac31e31","ref":"refs/heads/main","pushedAt":"2024-05-23T13:14:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"filtered files from new genome","shortMessageHtmlLink":"filtered files from new genome"}},{"before":"0b540962f2d8cedb172887a679a2aff5caff57ec","after":"2fe55d73e07bf8fb18e972fc689d671079d75e50","ref":"refs/heads/main","pushedAt":"2024-05-22T20:13:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"separate output folder for missing value analysis","shortMessageHtmlLink":"separate output folder for missing value analysis"}},{"before":"804bd6d5af810d3e2f337c8f24a0aa3749bd8b38","after":"0b540962f2d8cedb172887a679a2aff5caff57ec","ref":"refs/heads/main","pushedAt":"2024-05-22T20:12:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"allow for one missing value per group for BAT_summarize","shortMessageHtmlLink":"allow for one missing value per group for BAT_summarize"}},{"before":"663fa7b6e79bc931a3bdb60549e9652eacefd74a","after":"804bd6d5af810d3e2f337c8f24a0aa3749bd8b38","ref":"refs/heads/main","pushedAt":"2024-05-22T19:37:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"rm global methylation section\n\nonly one common locus across all samples!","shortMessageHtmlLink":"rm global methylation section"}},{"before":"ae80010bf3e304d95cb6e410ba730d79640e9cb6","after":"663fa7b6e79bc931a3bdb60549e9652eacefd74a","ref":"refs/heads/main","pushedAt":"2024-05-22T19:26:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"create union bedgraphs","shortMessageHtmlLink":"create union bedgraphs"}},{"before":"598656e5e3d5328893a84b4fa95ed2a69586444e","after":"ae80010bf3e304d95cb6e410ba730d79640e9cb6","ref":"refs/heads/main","pushedAt":"2024-05-22T19:07:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"load files from new genome","shortMessageHtmlLink":"load files from new genome"}},{"before":"a0ee418534acd0b33415df1f592d60e14a15ce2a","after":"598656e5e3d5328893a84b4fa95ed2a69586444e","ref":"refs/heads/main","pushedAt":"2024-05-21T20:41:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"oops, i didn't need to change that","shortMessageHtmlLink":"oops, i didn't need to change that"}},{"before":"7ca302e69bd32ce0ad1c3ed72b65590c185f8fc7","after":"a0ee418534acd0b33415df1f592d60e14a15ce2a","ref":"refs/heads/main","pushedAt":"2024-05-21T19:28:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"DMR identification with new genome","shortMessageHtmlLink":"DMR identification with new genome"}},{"before":"a20548f0f29b436dd986e02f9869d1eeab4b5fef","after":"7ca302e69bd32ce0ad1c3ed72b65590c185f8fc7","ref":"refs/heads/main","pushedAt":"2024-05-21T19:14:04.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"add hyp vs OC comparison","shortMessageHtmlLink":"add hyp vs OC comparison"}},{"before":"9c685437f979bc8aab6dffc6fd27dac041343834","after":"a20548f0f29b436dd986e02f9869d1eeab4b5fef","ref":"refs/heads/main","pushedAt":"2024-05-21T19:00:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"hypoxia vs OC comparisons","shortMessageHtmlLink":"hypoxia vs OC comparisons"}},{"before":"4f57c956380432bb714f64ada478e0b778957352","after":"9c685437f979bc8aab6dffc6fd27dac041343834","ref":"refs/heads/main","pushedAt":"2024-05-21T18:40:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"mod awk worked, commenting out for future runs","shortMessageHtmlLink":"mod awk worked, commenting out for future runs"}},{"before":"bf32e6eabfb95ac408d313d74492af64156e69c0","after":"4f57c956380432bb714f64ada478e0b778957352","ref":"refs/heads/main","pushedAt":"2024-05-21T18:38:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"fix group identifiers for hyp vs. OC","shortMessageHtmlLink":"fix group identifiers for hyp vs. OC"}},{"before":"81c677bcf1e0ea6a05b0e4a1ffba1ead5956ce95","after":"bf32e6eabfb95ac408d313d74492af64156e69c0","ref":"refs/heads/main","pushedAt":"2024-05-21T18:24:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"update code to modify bedgraphs","shortMessageHtmlLink":"update code to modify bedgraphs"}},{"before":"3e5ee5197a49558497e9f13ba324d6fef19315bc","after":"81c677bcf1e0ea6a05b0e4a1ffba1ead5956ce95","ref":"refs/heads/main","pushedAt":"2024-05-21T17:37:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"update filename","shortMessageHtmlLink":"update filename"}},{"before":"30bdd535b9be33955d9818b11591dcc43de0788c","after":"3e5ee5197a49558497e9f13ba324d6fef19315bc","ref":"refs/heads/main","pushedAt":"2024-05-21T16:20:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"add OC vs hypoxia comparisons for both populations","shortMessageHtmlLink":"add OC vs hypoxia comparisons for both populations"}},{"before":"4cd3198200e49cc93df81fa0310fe2491289d221","after":"30bdd535b9be33955d9818b11591dcc43de0788c","ref":"refs/heads/main","pushedAt":"2024-05-21T16:18:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yaaminiv","name":"Dr. Yaamini R. Venkataraman","path":"/yaaminiv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22335838?s=80&v=4"},"commit":{"message":"add OC vs hypoxia comparisons for both populations","shortMessageHtmlLink":"add OC vs hypoxia comparisons for both populations"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUk1RIQA","startCursor":null,"endCursor":null}},"title":"Activity ยท yaaminiv/killifish-hypoxia-RRBS"}