Chip-Seq, Atac-Seq workshop. University of South Carolina, Nov 16-17. The ATACseq section of this Workshop is at https://github.com/doliv071/ATACseq
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ChIPQC_experiment
ChIPQC_single
appMEMECHIP_4.12.01509807486762-571624097
full_data
input
rep1
rep2
ChIP_ATAC_Presentation_USC_2017.pdf
GREAT_reg_regions.png
GR_D_lfc.csv
README.md
chips_seq_summary.csv
chipseq_workshop.Rmd
chipseq_workshop.html
gene_region_association_rules.png
gr_d_union.fasta
gr_go.rda
gr_go_10000.rda
gr_great.rda
mm10-blacklist.bed
mmu04621.pathview.pdf
mmu04621.pathview.png
mmu04621.png
mmu04621.xml
mygraph.gml
mygraph.graphml
summary_gene_set.pdf

README.md

ChIPSeq_ATACSeq_Workshop

Chip-Seq, Atac-Seq workshop. University of South Carolina, Nov 16-17. The slides from the first day are in ChIP_ATAC_Presentation_USC_2017.pdf Read chipseq_workshop.html for a knitted version or download an entire repository and run chipseq_workshop.Rmd. This workflow is in the process of a revamping and streamlining. I will be posting new versions of this workflow from time to time - keep checking

The ATACseq section of this workshop by Dr. David Oliver is at https://github.com/doliv071/ATACseq