/proxl-import-xquest

Convert XQuest output to Proxl XML
  1. Java 100.0%
Java
Switch branches/tags
Nothing to show
Find file
Clone or download

Clone with HTTPS

Use Git or checkout with SVN using the web URL.

Download ZIP

Launching GitHub Desktop...

If nothing happens, download GitHub Desktop and try again.

Launching GitHub Desktop...

If nothing happens, download GitHub Desktop and try again.

Launching Xcode...

If nothing happens, download Xcode and try again.

Launching Visual Studio...

If nothing happens, download the GitHub extension for Visual Studio and try again.

Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
lib
lib_proxl_jars
lib_yeastrc_jars
resources
src/org/yeastrc/proxl/gen_import_xml/xquest
.gitignore
LICENSE
README.md
REDISTRIBUTED_LIBRARIES.md
ant__create_runnable_jar.xml
jar-in-jar-loader.zip

README.md

XQuest to Proxl XML Converter

Use this program to convert the results of a XQuest cross-linking analysis to Proxl XML suitable for import into the proxl web application.

How To Run

  1. Download the latest release.
  2. Run the program java -jar xquest2ProxlXML.jar with no arguments to see the possible parameters.
  3. Run the program, e.g., java -jar xquest2ProxlXML.jar -r ./xquest-output -l dss -o ./output.proxl.xml

In the above example, output.proxl.xml will be created and be suitable for import into ProXL.

For more information on importing data into Proxl, please see the Proxl Import Documentation.

More Information About Proxl

For more information about Proxl, visit http://proxl-ms.org/.