From 1e9fd0c4b565bad410ef7e1b1ffd0b53b31a8548 Mon Sep 17 00:00:00 2001
From: 36000 <jk6.28@outlook.com>
Date: Tue, 2 Apr 2024 11:33:38 -0700
Subject: [PATCH 1/4] [ENH] make table optional

---
 setup.cfg | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/setup.cfg b/setup.cfg
index 74d704a..42a28fb 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -41,7 +41,6 @@ install_requires =
     seaborn==0.13.0
     scikit-learn==1.2.1
     sklearn_pandas>=2.0.0
-    tables==3.9.1
     tqdm
     statsmodels==0.14.0
     copt==0.9.1
@@ -50,6 +49,8 @@ include_package_data = True
 packages = find:
 
 [options.extras_require]
+hdf5 = 
+    tables==3.9.1
 torch =
     torch
 tf =

From ac50229cf03d9ea93e78f3b3a964b524392ddb7c Mon Sep 17 00:00:00 2001
From: 36000 <jk6.28@outlook.com>
Date: Tue, 2 Apr 2024 12:34:18 -0700
Subject: [PATCH 2/4] flesh this out

---
 .github/workflows/docbuild.yml |  2 +-
 afqinsight/h5io.py             | 11 +++++++++++
 setup.cfg                      |  2 +-
 3 files changed, 13 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/docbuild.yml b/.github/workflows/docbuild.yml
index 392444d..eaa42f5 100644
--- a/.github/workflows/docbuild.yml
+++ b/.github/workflows/docbuild.yml
@@ -20,7 +20,7 @@ jobs:
       - name: Install
         run: |
           python -m pip install --upgrade pip
-          python -m pip install .[dev]
+          python -m pip install .[dev,tables]
       - name: Build docs
         run: |
           cd doc
diff --git a/afqinsight/h5io.py b/afqinsight/h5io.py
index c01877a..d70c339 100644
--- a/afqinsight/h5io.py
+++ b/afqinsight/h5io.py
@@ -39,6 +39,17 @@
 import tables
 import warnings
 from scipy import sparse
+from dipy.utils.optpkg import optional_package
+
+
+tables_msg = (
+    "To use AFQ-Insight's h5io classes, you will need to have tables "
+    "installed. You can do this by installing afqinsight with `pip install "
+    "afqinsight[tables]`, or by separately installing these packages with "
+    "`pip install tables`."
+)
+tables, HAS_TABLES, _ = optional_package("tables", trip_msg=tables_msg)
+
 
 try:
     import pandas as pd
diff --git a/setup.cfg b/setup.cfg
index 42a28fb..e1f8489 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -49,7 +49,7 @@ include_package_data = True
 packages = find:
 
 [options.extras_require]
-hdf5 = 
+tables = 
     tables==3.9.1
 torch =
     torch

From 58e1be99fa3ee23550b9698af41114f5a98d544d Mon Sep 17 00:00:00 2001
From: 36000 <jk6.28@outlook.com>
Date: Tue, 2 Apr 2024 12:40:03 -0700
Subject: [PATCH 3/4] bf

---
 afqinsight/h5io.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/afqinsight/h5io.py b/afqinsight/h5io.py
index d70c339..981dfad 100644
--- a/afqinsight/h5io.py
+++ b/afqinsight/h5io.py
@@ -36,7 +36,6 @@
 """
 
 import numpy as np
-import tables
 import warnings
 from scipy import sparse
 from dipy.utils.optpkg import optional_package

From 51709b71e7574f6040b273b0fb8f292a5c5aa9ed Mon Sep 17 00:00:00 2001
From: 36000 <jk6.28@outlook.com>
Date: Tue, 2 Apr 2024 12:50:00 -0700
Subject: [PATCH 4/4] add tables to all

---
 setup.cfg | 1 +
 1 file changed, 1 insertion(+)

diff --git a/setup.cfg b/setup.cfg
index e1f8489..f70d775 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -78,6 +78,7 @@ maint =
     rapidfuzz
 
 all =
+    %(tables)s
     %(torch)s
     %(tf)s
     %(dev)s