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Intuitive local web frontend for sequence BLAST (www search form)
JavaScript Ruby HTML CSS
Pull request Compare This branch is 22 commits ahead of wurmlab:master.

Attempt to improve report overview & fix params parsing.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
latest commit 5acde19601
@yeban authored

README.md

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SequenceServer - BLAST searching made easy!

SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web.

Installation

Please see http://www.sequenceserver.com.

Contribute

You will need Ruby, NodeJS, respective package managers (RubyGems and npm), and CodeClimate for development.

Get source code.
git clone https://github.com/yannickwurm/sequenceserver
cd sequenceserver
Install dependencies.
Ruby
gem install bundler && bundle

We use Capybara with WebKit driver for functional testing. If the above step fails, install qt (On Mac: brew install qt) and run bundle again.

If you are deploying SequenceServer from git (not advised) you can skip installing development dependencies (and qt) by running

bundle install --without=development
Node
npm install

We use jspm for front-end package management.

Run, test, lint, build

# Launch SequenceServer in development mode.
bundle exec bin/sequenceserver -D

# Run tests, code linters, and build.
rake

Contributors

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