• Do not edit this repo! Everything here is machine-generated by Travis-CI every time we push to the yeolab/yeolab.github.io-source page

    HTML 3 Updated Aug 18, 2018
  • 🌊 Source code for http://yeolab.github.io/, autodeployed using Travis-CI

    Python 6 Updated Aug 17, 2018
  • Common Workflow Language 2 BSD-3-Clause Updated Aug 8, 2018
  • A tool to identify CLIP-seq peaks

    Python 25 22 Updated Aug 7, 2018
  • ⚓️ Find bimodal, unimodal, and multimodal features in your data

    Python 5 4 BSD-3-Clause Updated Jul 30, 2018
  • splicing and feature maps for RBPs

    Python 1 Updated Jul 27, 2018
  • Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks

    Perl Updated Jun 12, 2018
  • Python Updated May 15, 2018
  • This is an adaptation of the html5up template "Twenty" for the Python static site generator Pelican.

    HTML 30 Updated May 10, 2018
  • General Use Scripts and Helper functions

    Python 8 11 MIT Updated Mar 29, 2018
  • Converts a BAM file into strand-specific bigwig files.

    Python Updated Mar 22, 2018
  • Jupyter Notebook 2 7 Updated Oct 6, 2017
  • CWL+Singularity implementation of an RNA editing workflow

    Jupyter Notebook 16 4 BSD-3-Clause Updated Sep 6, 2017
  • Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

    Python 28 17 BSD-3-Clause 2 issues need help Updated Aug 8, 2017
  • Jupyter Notebook 1 Updated Jul 29, 2017
  • 📐 Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.

    Python 3 1 BSD-3-Clause Updated Jun 29, 2017
  • Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data

    4 3 BSD-3-Clause Updated Jun 29, 2017
  • Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation" by Song and Botvinnik, et al

    Jupyter Notebook 7 2 Updated Jun 28, 2017
  • A program to construct SVM model and get classification scores for predicting RNA-binding proteins with given PPI network and RBP annotation list

    Python 1 Updated Jun 26, 2017
  • A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

    Python 139 Updated Jun 19, 2017
  • Reproducible machine learning analysis of gene expression and alternative splicing data

    Jupyter Notebook 100 24 BSD-3-Clause 2 issues need help Updated Apr 19, 2017
  • A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    Python 935 BSD-3-Clause Updated Apr 4, 2017
  • Getting started in the yeolab

    Shell 3 3 GPL-2.0 Updated Nov 16, 2016
  • qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python

    Python 14 1 Updated Aug 24, 2016
  • Course material in notebook format for learning about single cell bioinformatics methods

    Jupyter Notebook 32 20 BSD-3-Clause Updated Jun 19, 2016
  • Single cell bioinformatics class at the Sanford Consortium for Regenerative Medicine (SCRM) in 2016

    Jupyter Notebook 3 4 BSD-3-Clause Updated Jun 6, 2016
  • Mirror of analysis files for "Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells"

    Jupyter Notebook 6 Updated May 21, 2016
  • Cookiecutter template for a Python package. See https://github.com/audreyr/cookiecutter.

    Python 830 Updated Dec 16, 2015
  • Python Templates for the PyCharm IDE

    Python 51 Updated May 27, 2015
  • Dataset for Shalek et al 2013 single-cell analysis paper

    1 GPL-2.0 Updated Dec 13, 2014