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Do not edit this repo! Everything here is machine-generated by Travis-CI every time we push to the yeolab/yeolab.github.io-source page
A tool to identify CLIP-seq peaks
splicing and feature maps for RBPs
Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
This is an adaptation of the html5up template "Twenty" for the Python static site generator Pelican.
General Use Scripts and Helper functions
Converts a BAM file into strand-specific bigwig files.
CWL+Singularity implementation of an RNA editing workflow
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
A program to construct SVM model and get classification scores for predicting RNA-binding proteins with given PPI network and RBP annotation list
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
Reproducible machine learning analysis of gene expression and alternative splicing data
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Getting started in the yeolab
qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
Course material in notebook format for learning about single cell bioinformatics methods
Single cell bioinformatics class at the Sanford Consortium for Regenerative Medicine (SCRM) in 2016
Mirror of analysis files for "Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells"
Cookiecutter template for a Python package. See https://github.com/audreyr/cookiecutter.
Python Templates for the PyCharm IDE
Dataset for Shalek et al 2013 single-cell analysis paper