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I've posted the problem I had in the forum here:
Basically my session IDs are longer than the CHAR(32) specified in CDbHttpSession and hence I had problems using it until I figured it out.
The settings responsible in the php.ini appear to be
session.hash_bits_per_character = 5
session.hash_function = sha256
That means using 'autoCreateSessionTable=true' will not work at all in my case as the CHAR(32) is hardcoded in
protected function createSessionTable($db,$tableName)
Also would be good if in the documentation there was a hint about this as this was all new to me since I haven't paid much attention to session ids up until now.
Added comments in phpdoc.