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Circos
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.. image:: _images/circos.png
:align: right
* **circos dir**: Path of unzipped circos folder. :file:`/circos_path/bin`
* **conf dir**: Path of circos configure file.
* **roi info**: CSV table which defines sub-areas and lobes, there is an example in :file:`brant-master/circos/brant_circos_3mm_273.csv`
* There should be at least four columns in the table:
* **label**: label of each sub-areas.
* **module**: to which lobe/module does the sub-area belong.
* **index_module**: order of the arranged module.
* **index_node**: order of sub-areas within one module.
**Before using the function, please download and install circos 0.69 or higher.**
- **Buttons**:
- **S**: Save parameters of the current panel to a :file:`\*.mat` file. The :file:`\*.mat` can be further loaded for the panel or be used in a script processing.
- **L**: Load parameters from :file:`\*.mat` for the current panel.
- **?**: Help information.
* **References**:
1. Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, et al. Circos: an information aesthetic for comparative genomics. *Genome Res 2009*; 19(9): 1639-45.
2. Irimia A, Chambers MC, Torgerson CM, Van Horn JD. Circular representation of human cortical networks for subject and population-level connectomic visualization. *Neuroimage 2012*; 60(2): 1340-51.
3. Fan L, Li H, Zhuo J, Zhang Y, Wang J, Chen L, et al. The Human Brainnetome Atlas: A New Brain Atlas Based on Connectional Architecture. *Cereb Cortex 2016*; 26(8): 3508-26.