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.. Brant documentation master file, created by
sphinx-quickstart on Fri May 26 16:27:58 2017.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
Welcome to Brant!
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To facilitate data processing and deal with above listed issues, we’ve written an extendable MATLAB based toolbox BRANT (BRAinNetome Toolkit), which integrates fMRI data preprocessing, voxel-wise spontaneous activity analysis, functional connectivity analysis, complex network analysis, statistical analysis, data visualization as well as several useful utilities. We designed the toolbox using dynamically generated GUIs, with which other developers can generate their own GUIs by adding a few lines of MATLAB code. Also, to simplify the input process during using BRANT, most functions are initialized with default settings, users will only need to specify several necessary parameters, with free access to all.
Functions of BRANT are arranged into 7 modules, which are preprocessing, functional connectivity (FC), spontaneous activity (SPON), complex network analysis (NET), statistics (STAT), visualization (View) and utilities. More details on proper module can be found in its own part.
**Please cite this work if you use the Brant**.
Xu, K., Liu, Y., Zhan, Y., Ren, J., Jiang, T. (2018) `BRANT: A Versatile and Extendable Resting-State fMRI Toolkit`_. Front Neuroinform, 12:52.
.. image:: _images/main_gui.png
:align: center
.. image:: _images/arrangement.png
:align: center
.. toctree::
:maxdepth: 2
:glob:
Menu_Preprocess
Menu_FC
Menu_SPON
Menu_Utilities
Menu_NET
Menu_STAT
Menu_Embedded
Menu_VIEW
Menu_examples
Download
FAQs
Menu_Contact
Publications_using_Brant
.. _`BRANT: A Versatile and Extendable Resting-State fMRI Toolkit`: https://www.frontiersin.org/articles/10.3389/fninf.2018.00052