[R package] An Improved Function to Plot Heatmap of Genomic Data
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README.md

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gvmap package

An Improved Function to Plot Heatmap of Genomic Data

DESCRIPTION

Gvmap is an R package that can integrate multiple heatmap and legend figures.

INSTALLATION

Gvmap depends on several R packages. They are configr, dendextend, matrixStats, easySVG, rsvg, and stringr.

You can install gvmap through github or source code.

Github

# Install the cutting edge development version from GitHub:
# install.packages("devtools")

# install easySVG
devtools::install_github("ytdai/easySVG")

# install other packages
install.packages("configr")
install.packages("dendextend")
install.packages("matrixStats")
install.packages("rsvg")
install.packages("stringr")

devtools::install_github("ytdai/gvmap")

Zip/Tarball

  1. Download the appropriate zip file or tar.gz file from Github
  2. Unzip the file and change directories into the gvmap directory
  3. Run R CMD INSTALL pkg

Plot

Run by default paramter

example.1.svg

Only one heatmap

example.2.svg

Only legend

example.3.svg

Add sample span and heatmap span

example.4.svg

End