Traceback (most recent call last): File "/usr/local/apps/eb/methylpy/1.3.2-foss-2016b-Python-2.7.14/bin/methylpy", line 4, in __import__('pkg_resources').run_script('methylpy==1.3.2', 'methylpy') File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 748, in run_script File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 1517, in run_script File "/usr/local/apps/eb/methylpy/1.3.2-foss-2016b-Python-2.7.14/lib/python2.7/site-packages/methylpy-1.3.2-py2.7.egg/EGG-INFO/scripts/methylpy", line 5, in parse_args() File "/usr/local/apps/eb/methylpy/1.3.2-foss-2016b-Python-2.7.14/lib/python2.7/site-packages/methylpy-1.3.2-py2.7.egg/methylpy/parser.py", line 133, in parse_args keep_temp_files=args.keep_temp_files) File "/usr/local/apps/eb/methylpy/1.3.2-foss-2016b-Python-2.7.14/lib/python2.7/site-packages/methylpy-1.3.2-py2.7.egg/methylpy/call_mc_se.py", line 242, in run_methylation_pipeline sort_mem=sort_mem) File "/usr/local/apps/eb/methylpy/1.3.2-foss-2016b-Python-2.7.14/lib/python2.7/site-packages/methylpy-1.3.2-py2.7.egg/methylpy/call_mc_se.py", line 517, in run_mapping sort_mem=sort_mem) File "/usr/local/apps/eb/methylpy/1.3.2-foss-2016b-Python-2.7.14/lib/python2.7/site-packages/methylpy-1.3.2-py2.7.egg/methylpy/call_mc_se.py", line 935, in run_alignment keep_temp_files=keep_temp_files) File "/usr/local/apps/eb/methylpy/1.3.2-foss-2016b-Python-2.7.14/lib/python2.7/site-packages/methylpy-1.3.2-py2.7.egg/methylpy/call_mc_se.py", line 1028, in find_multi_mappers flag = int(fields[1]) ValueError: invalid literal for int() with base 10: 'XM:i:5'