methylpy DMRfind \
--allc-files /gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-151_S2.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-152_S3.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-153_S4.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-154_S5.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-159_S6.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-160_S7.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-161_S8.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-162_S9.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-167_S10.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-168_S11.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-169_S12.tsv.gz \
/gscratch/scrubbed/strigg/analyses/20190925/allc_EPI-170_S13.tsv.gz \
--samples EPI-151 EPI-152 EPI-153 EPI-154 EPI-159 EPI-160 EPI-161 EPI-162 EPI-167 EPI-168 EPI-169 EPI-170 \
--mc-type "CGN" \
--num-procs 8 \
--min-cov 5 \
--output-prefix day135_AllpH_DMR250bp_MCmax25_cov5x_clst3 \
--mc-max-dist 25 \
--dmr-max-dist 250 \
--min-num-dms 3 \
--sample-category 0 0 0 0 1 1 1 1 2 2 2 2 \
--min-cluster 3