dammit_geneclustid dammit_transid Rep_Uniref90Protein_Name Nseqs_in_Uniref90Cluster Rep_Uniref90Taxon Rep_Uniref90TaxonID Rep_SeqID dammit_index dammit_homologyid dammit_database dammit_evalue dammit_matchsource dammit_matchtype dammit_seqid trino_seqid DEgene_index baseMean log2FoldChange lfcSE stat pvalue padj unexp43c unexp47c exp685C exp686.1 trino_geneid trino_transid sprot_Top_BLASTX_hit trino_protid prot_coords sprot_Top_BLASTP_hit Pfam SignalP TmHMM eggnog Kegg gene_ontology_blast gene_ontology_pfam goterms pub_og_id og_name_web level og_GOterms int_prot_id level_taxid og_name organism_taxid UniProtid ENSEMBL_gene_id NCBI_gid description PAN_4 PAN_4 Transcript_48291 NA NA NA NA NA 352847 homology:152979 8E-09 HMMER protein_hmm_match Transcript_48291 len=852 CDS=0-852 exon=0-852 gene=0-852 mRNA=0-852 hmm_matches=PAN_4:390-483,PAN_1:390-561,PAN_4:597-759,PAN_1:597-777 TRINITY_DN38556_c2_g1_i5.p1 TRINITY_DN38556_c2_g1~~TRINITY_DN38556_c2_g1_i5.p1 ORF type:5prime_partial len:284 (-),score=46.59 TRINITY_DN38556_c2_g1_i5:190-1041(-) 1262 138.60 5.26 1.80 2.92 0.003513 0.041068 538.27 1.97 9.24 4.92 TRINITY_DN38556_c2_g1 TRINITY_DN38556_c2_g1_i5.p1 . TRINITY_DN38556_c2_g1_i5.p1.p1 1-852[+] . PF14295.5^PAN_4^PAN domain^131-161^E:0.019`PF14295.5^PAN_4^PAN domain^200-253^E:8.3e-09`PF00024.25^PAN_1^PAN domain^200-259^E:4.8e-06 . ExpAA=23.06^PredHel=1^Topology=i21-43o . . . . NA NA NA NA NA NA NA NA NA NA NA NA NA EF-hand_1 EF-hand_1 Transcript_57668 NA NA NA NA NA 432998 homology:102 5.7E-09 HMMER protein_hmm_match Transcript_57668 len=291 CDS=0-291 exon=0-291 gene=0-291 mRNA=0-291 hmm_matches=EF-hand_1:228-255,EF-hand_8:228-255,EF-hand_8:48-150,EF-hand_6:75-153,EF-hand_1:75-153,EF-hand_5:78-138 TRINITY_DN63981_c0_g1_i1.p1 TRINITY_DN63981_c0_g1~~TRINITY_DN63981_c0_g1_i1.p1 ORF type:3prime_partial len:109 (-),score=19.31 TRINITY_DN63981_c0_g1_i1:2-292(-) 248 115.57 7.53 1.70 4.42 0.000010 0.000553 446.72 13.09 1.06 1.41 TRINITY_DN63981_c0_g1 TRINITY_DN63981_c0_g1_i1.p1 . . . . . . . . . . . NA NA NA NA NA NA NA NA NA NA NA NA NA UniRef90_V9P2V2 UniRef90_V9P2V2 Transcript_16049 Heat shock protein 70 2 Calanoida 6833 V9P2V2_9MAXI 55890 homology:203468 uniref90 2E-280 LAST translated_nucleotide_match Transcript_16049 len=984 CDS=0-984,0-984 exon=0-984,0-984 gene=0-984,0-984 mRNA=0-984,0-984 hmm_matches=MreB_Mbl:12-681,NAD-GH:0-984,HSP70:0-984 homologies=ENSXETP00000019397:0-984,UniRef90_V9P2V2:0-984 TRINITY_DN28497_c0_g5_i1.p2 TRINITY_DN28497_c0_g5~~TRINITY_DN28497_c0_g5_i1.p2 ORF type:internal len:329 (-),score=77.33 TRINITY_DN28497_c0_g5_i1:2-985(-) 690 70.04 5.30 1.54 3.43 0.000597 0.012502 260.23 12.96 3.69 3.27 TRINITY_DN28497_c0_g5 TRINITY_DN28497_c0_g5_i1.p2 HSP71_ORYLA^HSP71_ORYLA^Q:984-1,H:152-477^89.02%ID^E:6e-178^RecName: Full=Heat shock 70 kDa protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias TRINITY_DN28497_c0_g5_i1.p2.p1 1-984[+] DHE2_ACHKL^DHE2_ACHKL^Q:1-328,H:566-891^40.43%ID^E:1e-69^RecName: Full=NAD-specific glutamate dehydrogenase;^Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Achlya PF10712.8^NAD-GH^NAD-specific glutamate dehydrogenase^1-328^E:2.4e-94 . . . . GO:0004352^molecular_function^glutamate dehydrogenase (NAD+) activity . GO:0003674,GO:0003824,GO:0004352,GO:0016491,GO:0016638,GO:0016639 NA NA NA NA NA NA NA NA NA NA NA NA EDO46714 EDO46714 Transcript_43996 NA NA NA NA NA 311458 homology:185794 OrthoDB 0 LAST translated_nucleotide_match Transcript_43996 len=5826 CDS=0-5826 exon=0-5826 gene=0-5826 mRNA=0-5826 hmm_matches=Helicase_C:1416-1836,DEAD:1674-1707,Sec63:2199-3126,ResIII:3252-3651,DEAD:3252-3750,AAA_22:3303-3711,Helicase_C:3936-4347,Sec63:4701-5757,ResIII:702-1224,DEAD:702-1227,AAA_22:744-1143,Helicase_C:840-981 homologies=EDO46714:0-5808,UniRef90_A0A1S3IAE7:0-5817 TRINITY_DN37242_c1_g1_i10.p1 TRINITY_DN37242_c1_g1~~TRINITY_DN37242_c1_g1_i10.p1 ORF type:complete len:1942 (+),score=319.93 TRINITY_DN37242_c1_g1_i10:925-6750(+) 1264 4148.09 1.56 0.54 2.92 0.003554 0.041473 6924.46 5472.73 2649.16 1546.02 TRINITY_DN37242_c1_g1 TRINITY_DN37242_c1_g1_i10.p1 ASCC3_CHICK^ASCC3_CHICK^Q:1-5808,H:255-2201^64.64%ID^E:0^RecName: Full=Activating signal cointegrator 1 complex subunit 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus TRINITY_DN37242_c1_g1_i10.p1.p1 1-5826[+] ASCC3_CHICK^ASCC3_CHICK^Q:1-1936,H:255-2201^64.64%ID^E:0^RecName: Full=Activating signal cointegrator 1 complex subunit 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus PF00270.28^DEAD^DEAD/DEAH box helicase^235-409^E:5.2e-25`PF04851.14^ResIII^Type III restriction enzyme, res subunit^235-408^E:2e-11`PF00271.30^Helicase_C^Helicase conserved C-terminal domain^517-611^E:1.8e-06`PF02889.15^Sec63^Sec63 Brl domain^734-1042^E:2.5e-79`PF00270.28^DEAD^DEAD/DEAH box helicase^1085-1250^E:7.2e-24`PF04851.14^ResIII^Type III restriction enzyme, res subunit^1085-1217^E:5.7e-13`PF00271.30^Helicase_C^Helicase conserved C-terminal domain^1363-1448^E:3.2e-07`PF02889.15^Sec63^Sec63 Brl domain^1568-1919^E:2.7e-67 . . COG1204^helicase KEGG:gga:421790`KO:K18663 GO:0099053^cellular_component^activating signal cointegrator 1 complex`GO:0005829^cellular_component^cytosol`GO:0016020^cellular_component^membrane`GO:0005634^cellular_component^nucleus`GO:0005524^molecular_function^ATP binding`GO:0043140^molecular_function^ATP-dependent 3'-5' DNA helicase activity`GO:0003723^molecular_function^RNA binding`GO:0008283^biological_process^cell proliferation`GO:0006307^biological_process^DNA dealkylation involved in DNA repair`GO:0032508^biological_process^DNA duplex unwinding`GO:0006355^biological_process^regulation of transcription, DNA-templated`GO:0006351^biological_process^transcription, DNA-templated GO:0003676^molecular_function^nucleic acid binding`GO:0005524^molecular_function^ATP binding`GO:0003677^molecular_function^DNA binding`GO:0016787^molecular_function^hydrolase activity GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003723,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005634,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006307,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030554,GO:0031323,GO:0031326,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035510,GO:0035639,GO:0036094,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043234,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044699,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0099053,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:2000112,GO:2001141 EOG091G0HE5 activating signal cointegrator 1 complex subunit 3 Metazoa GO:0005515,GO:0003674 45351:005b44 33208 activating signal cointegrator 1 complex subunit 3 45351 A7RPC5 NEMVEDRAFT_v1g88887 5518846 hypothetical protein UniRef90_S2Z533 UniRef90_S2Z533 Transcript_25552 Uncharacterized protein 1 Actinomyces sp. HPA0247 1203556 S2Z533_9ACTO 139476 homology:210692 uniref90 8.2E-18 LAST translated_nucleotide_match Transcript_25552 len=1371 CDS=1007-1370,0-1371 exon=0-1371,0-1371 five_prime_UTR=1370-1371 gene=0-1371,0-1371 mRNA=0-1371,0-1371 three_prime_UTR=0-1007 homologies=UniRef90_S2Z533:1074-1368,A1DIX7_NEOFI:1194-1371 TRINITY_DN31508_c0_g1_i4.p1 TRINITY_DN31508_c0_g1~~TRINITY_DN31508_c0_g1_i4.p1 ORF type:3prime_partial len:458 (+),score=51.81 TRINITY_DN31508_c0_g1_i4:215-1585(+) 803 704.86 1.79 0.54 3.31 0.000938 0.017024 1244.73 941.61 372.71 260.40 TRINITY_DN31508_c0_g1 TRINITY_DN31508_c0_g1_i4.p1 . TRINITY_DN31508_c0_g1_i4.p1.p1 1-1371[+] . . . ExpAA=125.09^PredHel=6^Topology=i76-98o130-152i173-192o197-219i268-290o310-332i . . . . NA NA NA NA NA NA NA NA NA NA NA NA NA UniRef90_U3K0G3 UniRef90_U3K0G3 Transcript_13638 General transcription factor IIF subunit 2 7 Aves 8782 U3K0G3_FICAL 33476 homology:201635 uniref90 7.6E-42 LAST translated_nucleotide_match Transcript_13638 len=447 CDS=0-447 exon=0-447 gene=0-447 mRNA=0-447 hmm_matches=TFIIF_beta:63-390 homologies=UniRef90_U3K0G3:39-393,ENSPVAP00000013288:78-393 TRINITY_DN27754_c1_g2_i1.p1 TRINITY_DN27754_c1_g2~~TRINITY_DN27754_c1_g2_i1.p1 ORF type:complete len:149 (-),score=29.03 TRINITY_DN27754_c1_g2_i1:185-631(-) 1294 86.16 3.47 1.20 2.90 0.003776 0.043121 187.90 127.90 25.86 2.99 TRINITY_DN27754_c1_g2 TRINITY_DN27754_c1_g2_i1.p1 T2FB_HUMAN^T2FB_HUMAN^Q:64-393,H:102-211^53.64%ID^E:1e-25^RecName: Full=General transcription factor IIF subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo TRINITY_DN27754_c1_g2_i1.p1.p1 1-447[+] T2FB_HUMAN^T2FB_HUMAN^Q:22-131,H:102-211^53.64%ID^E:9e-35^RecName: Full=General transcription factor IIF subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo PF02270.14^TFIIF_beta^Transcription initiation factor IIF, beta subunit^23-130^E:1.3e-21 . . COG5090^factor iif KEGG:hsa:2963`KO:K03139 GO:0015630^cellular_component^microtubule cytoskeleton`GO:0005654^cellular_component^nucleoplasm`GO:0005634^cellular_component^nucleus`GO:0005674^cellular_component^transcription factor TFIIF complex`GO:0097550^cellular_component^transcriptional preinitiation complex`GO:0005524^molecular_function^ATP binding`GO:0003677^molecular_function^DNA binding`GO:0004386^molecular_function^helicase activity`GO:0000991^molecular_function^transcription factor activity, core RNA polymerase II binding`GO:0006370^biological_process^7-methylguanosine mRNA capping`GO:0008543^biological_process^fibroblast growth factor receptor signaling pathway`GO:0000398^biological_process^mRNA splicing, via spliceosome`GO:0032968^biological_process^positive regulation of transcription elongation from RNA polymerase II promoter`GO:0060261^biological_process^positive regulation of transcription initiation from RNA polymerase II promoter`GO:0050434^biological_process^positive regulation of viral transcription`GO:0016070^biological_process^RNA metabolic process`GO:0042795^biological_process^snRNA transcription from RNA polymerase II promoter`GO:0006368^biological_process^transcription elongation from RNA polymerase II promoter`GO:0006366^biological_process^transcription from RNA polymerase II promoter`GO:0006367^biological_process^transcription initiation from RNA polymerase II promoter GO:0006366^biological_process^transcription from RNA polymerase II promoter`GO:0006367^biological_process^transcription initiation from RNA polymerase II promoter`GO:0005674^cellular_component^transcription factor TFIIF complex GO:0000166,GO:0000375,GO:0000377,GO:0000398,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005634,GO:0005654,GO:0005667,GO:0005674,GO:0005856,GO:0006139,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015630,GO:0016070,GO:0016071,GO:0016073,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0032993,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035639,GO:0036094,GO:0036260,GO:0042795,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043234,GO:0043254,GO:0043900,GO:0043902,GO:0043903,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046782,GO:0048518,GO:0048522,GO:0048524,GO:0050434,GO:0050789,GO:0050792,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0060260,GO:0060261,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097367,GO:0097550,GO:0097659,GO:0098781,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1903900,GO:1903902,GO:2000112,GO:2000142,GO:2000144,GO:2001141 NA NA NA NA NA NA NA NA NA NA NA NA EDO31289 EDO31289 Transcript_3631 NA NA NA NA NA 237785 homology:180401 OrthoDB 3.9E-93 LAST translated_nucleotide_match Transcript_3631 len=552 CDS=0-552 exon=0-552 gene=0-552 mRNA=0-552 hmm_matches=zf-RING_2:240-252,zf-CHY:342-540,zf-CHY:36-258,zf-RING_2:408-537 homologies=UniRef90_A7SYC9:36-537,EDO31289:36-537 TRINITY_DN22937_c0_g1_i2.p1 TRINITY_DN22937_c0_g1~~TRINITY_DN22937_c0_g1_i2.p1 ORF type:complete len:184 (-),score=14.09 TRINITY_DN22937_c0_g1_i2:536-1087(-) 810 618.17 1.86 0.56 3.30 0.000972 0.017491 1044.61 894.45 332.61 200.99 TRINITY_DN22937_c0_g1 TRINITY_DN22937_c0_g1_i2.p1 ZN363_HUMAN^ZN363_HUMAN^Q:37-537,H:20-186^47.37%ID^E:3e-44^RecName: Full=RING finger and CHY zinc finger domain-containing protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo TRINITY_DN22937_c0_g1_i2.p1.p1 1-552[+] ZN363_HUMAN^ZN363_HUMAN^Q:13-179,H:20-186^47.37%ID^E:2e-44^RecName: Full=RING finger and CHY zinc finger domain-containing protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo PF05495.11^zf-CHY^CHY zinc finger^13-86^E:2e-18`PF13639.5^zf-RING_2^Ring finger domain^137-179^E:4.4e-07 . . ENOG410XXHF^ring finger and CHY zinc finger KEGG:hsa:25898`KO:K10144 GO:0005737^cellular_component^cytoplasm`GO:0005829^cellular_component^cytosol`GO:0016607^cellular_component^nuclear speck`GO:0005654^cellular_component^nucleoplasm`GO:0005634^cellular_component^nucleus`GO:0000151^cellular_component^ubiquitin ligase complex`GO:0002039^molecular_function^p53 binding`GO:0042803^molecular_function^protein homodimerization activity`GO:0005102^molecular_function^receptor binding`GO:0004842^molecular_function^ubiquitin-protein transferase activity`GO:0008270^molecular_function^zinc ion binding`GO:0070987^biological_process^error-free translesion synthesis`GO:0032436^biological_process^positive regulation of proteasomal ubiquitin-dependent protein catabolic process`GO:0031398^biological_process^positive regulation of protein ubiquitination`GO:0051865^biological_process^protein autoubiquitination`GO:0016567^biological_process^protein ubiquitination`GO:0042787^biological_process^protein ubiquitination involved in ubiquitin-dependent protein catabolic process GO:0008270^molecular_function^zinc ion binding GO:0000151,GO:0000731,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0016604,GO:0016607,GO:0016740,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019985,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042176,GO:0042787,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045862,GO:0046483,GO:0046872,GO:0046914,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0051865,GO:0060255,GO:0061136,GO:0065007,GO:0070647,GO:0070987,GO:0071704,GO:0071897,GO:0080090,GO:0090304,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1990234 EOG091G094U Similarity:Contains 1 pre-SET domain. Metazoa GO:0005515 45351:0020f5 33208 Zinc finger, RING-type 45351 A7SYC9 NEMVEDRAFT_v1g194754 5502167 hypothetical protein