uparse/usearch comes with an optional set of python scripts. This package combines these scripts and makes them available system wide, hopefully reducing filesystem clutter and enhancing reproducibility.
uparse_fasta_number.py --fasta fastafile --prefix "awesome_experiment" > fastafile
fastq_strip_barcode_relabel_py
uparse_fastq_strip_barcode_relabel_py --fastq fastqfile --primer "ACCTTAC" --barcodefilename barcodes.txt --labelprefix "my_label" > output
uparse_faqual2fastq.py --fasta fastafile --qual qualfile > output
uparse_uc2otutab.py --ucfile ucfile > output