> Copyright 2018 National Technology & Engineering Solutions of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with NTESS, the U.S. Government retains certain rights in this software. This comment is not interpreted, so store any extra info here. Keywords are case insensitive. Look at the help below. IMPORTANT: avoid the use of '2d' and '3d' in the names of species, transition states and reactions (these strings are employed when generating the 2d and 3d files of the molecules) If you want to use 3D coordinates, store them in a xyz/ directory in the same directory as the python script > 601842261640800060001 > title 0 # print a title (1) or not (0) units kcal/mol # energy units use_xyz 1 # use xyz, put 0 to switch off rescale 0 # no rescale , put the well or bimolecular name here to rescale to that value fh 9. # figure height fw 18. # figure width margin 0.2 # margin fraction on the x and y axis dpi 120 # dpi of the molecule figures save 1 # does the plot need to be saved (1) or displayed (0) write_ts_values 1 # booleans tell if the ts energy values should be written write_well_values 1 # booleans tell if the well and bimolecular energy values should be written bimol_color red # color of the energy values for the bimolecular products well_color blue # color of the energy values of the wells ts_color green # color or the energy values of the ts, put to 'none' to use same color as line show_images 1 # boolean tells whether the molecule images should be shown on the graph rdkit4depict 1 # boolean that specifies which code was used for the 2D depiction axes_size 10 # font size of the axes text_size 10 # font size of the energy values on the graph graph_edge_color black # color of graph edge, if set to 'energy', will be scaled accordingly > 601842261640800060001 0.0 > > > > File follows the rules of SD file format for keywords. Keywords are case insensitive when parsed. Keywords: units: units of the energies supplied above usexyz: use the xyz coordinates of all the species and render a 2D/3D depiction rescale: energies are rescaled relative to the energy of the species given here wells: all the wells of the PES, separated by lines each line contains the name, the energy, and optionally the smiles bimolec: all the bimolecular products of the PES, separated by lines each line contains the name, the energy, and optionally the smiles of both bimolecular products ts: all the transition states of the PES, separated by lines each line contains the name, the energy, and the names of the reactant and product barrierless: all the barrierless reactions of the PES, separated by lines each line contains the name and the names of the reactant and product