Repositories
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chtc-submit
Lab submit scripts to run jobs on CHTC @ UW-Madion
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Core_imgproc
Zamanian lab imaging processing pipelines
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Docker
Lab Dockerfiles to run jobs on CHTC @ UW-Madion
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zamanianlab.github.io
Zamanian Lab Website, University of Wisconsin-Madison
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Core_RNAseq-nf
Nextflow RNA-seq pipeline for WBP/VB species
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BrugiaMotilityAnalysis
Scripts to analyze videos of moving worms
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Filarid_IsoSeq-ms
Companion scripts for Wheeler et al. 2020
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Core_smRNAseq-nf
Nextflow smRNA-seq pipeline for WBP/VB species
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LocalWBP
A collection of scrips for organizing a local version of WormBase ParaSite
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polyAudit
All-in-one poly(A) tail analyses for long-read RNA sequencing data
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ZamanianLabREnvironment
R environment and ggplot2 themes used by Zamanian Lab members
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RNAseq-VC-nf
Nextflow script for running a variant calling pipeline on RNA-seq data
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BmalayiRNAseq-nf Archived
Re-analysis of B. malayi public RNA-Seq data
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BrugiaChemo-ms
Companion scripts for Wheeler et al. 2020
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AsELV_smRNAseq-nf
Small RNA-seq analysis for Ascaris ELV project
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BgeVars
Repository for analyzing Bge cell line variants