ZamanianLab

Repositories

• ZamanianLabDocs
  Shell MIT 1 0 0 0 Updated Jan 22, 2021

• chtc-submit

  Lab submit scripts to run jobs on CHTC @ UW-Madion
  Shell 0 0 0 0 Updated Jan 8, 2021

• Core_imgproc

  Zamanian lab imaging processing pipelines
  Python MIT 0 0 0 0 Updated Jan 8, 2021

• Docker

  Lab Dockerfiles to run jobs on CHTC @ UW-Madion
  Dockerfile 0 0 0 0 Updated Dec 30, 2020

• zamanianlab.github.io

  Zamanian Lab Website, University of Wisconsin-Madison
  SCSS MIT 0 1 0 0 Updated Dec 23, 2020

• Core_RNAseq-nf

  Nextflow RNA-seq pipeline for WBP/VB species
  Nextflow MIT 0 0 0 0 Updated Dec 22, 2020

• BrugiaMotilityAnalysis

  Scripts to analyze videos of moving worms
  Python MIT 0 0 0 0 Updated Dec 21, 2020

• Filarid_IsoSeq-ms

  Companion scripts for Wheeler et al. 2020
  R MIT 0 0 0 0 Updated Oct 2, 2020

• Core_smRNAseq-nf

  Nextflow smRNA-seq pipeline for WBP/VB species
  Nextflow MIT 0 0 0 0 Updated Sep 22, 2020

• LocalWBP

  A collection of scrips for organizing a local version of WormBase ParaSite
  R MIT 0 0 0 0 Updated Sep 10, 2020

• Phylogenetics
  C++ MIT 0 0 0 0 Updated Aug 17, 2020

• polyAudit

  All-in-one poly(A) tail analyses for long-read RNA sequencing data
  Python MIT 0 0 0 0 Updated Aug 13, 2020

• ZamanianLabREnvironment

  R environment and ggplot2 themes used by Zamanian Lab members
  R 1 0 1 0 Updated Aug 3, 2020

• RNAseq-VC-nf

  Nextflow script for running a variant calling pipeline on RNA-seq data
  Nextflow MIT 0 1 0 0 Updated Aug 3, 2020

• BmalayiRNAseq-nf Archived

  Re-analysis of B. malayi public RNA-Seq data
  Python MIT 0 0 0 0 Updated Apr 19, 2020

• BrugiaChemo-ms

  Companion scripts for Wheeler et al. 2020
  HTML MIT 0 2 0 0 Updated Apr 11, 2020

• AsELV_smRNAseq-nf

  Small RNA-seq analysis for Ascaris ELV project
  Nextflow MIT 0 0 0 0 Updated Nov 28, 2018

• BgeVars

  Repository for analyzing Bge cell line variants
  R MIT 0 2 0 0 Updated Oct 15, 2018