release notes for 2.18.1 #3162
Workflow file for this run
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Linux Testing | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ['3.9', '3.10', '3.11', '3.12'] | |
numpy_version: ['>=1.24.0', '==1.23.*'] | |
exclude: | |
- python-version: '3.10' | |
numpy_version: '==1.23.*' | |
- python-version: '3.11' | |
numpy_version: '==1.23.*' | |
- python-version: '3.12' | |
numpy_version: '==1.23.*' | |
services: | |
redis: | |
image: redis | |
# Set health checks to wait until redis has started | |
options: >- | |
--health-cmd "redis-cli ping" | |
--health-interval 10s | |
--health-timeout 5s | |
--health-retries 5 | |
ports: | |
- 6379:6379 | |
mongodb: | |
image: mongo:4.4.11 | |
ports: | |
- 27017:27017 | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Setup Miniconda | |
uses: conda-incubator/setup-miniconda@v3.0.4 | |
with: | |
channels: conda-forge | |
python-version: ${{ matrix.python-version }} | |
env: | |
ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
# Runs a set of commands using the runners shell | |
- name: Create Conda environment with the rights deps | |
shell: "bash -l {0}" | |
run: | | |
conda create -n zarr-env python==${{matrix.python-version}} bsddb3 numcodecs lmdb pip nodejs flake8 mypy | |
conda activate zarr-env | |
npm install -g azurite | |
- name: Install dependencies | |
shell: "bash -l {0}" | |
run: | | |
conda activate zarr-env | |
python -m pip install --upgrade pip | |
python -m pip install -U pip setuptools wheel line_profiler | |
python -m pip install -rrequirements_dev_minimal.txt numpy${{matrix.numpy_version}} -rrequirements_dev_optional.txt pymongo redis | |
python -m pip install -e . | |
python -m pip freeze | |
- name: Tests | |
shell: "bash -l {0}" | |
env: | |
COVERAGE_FILE: .coverage.${{matrix.python-version}}.${{matrix.numpy_version}} | |
ZARR_TEST_ABS: 1 | |
ZARR_TEST_MONGO: 1 | |
ZARR_TEST_REDIS: 1 | |
ZARR_V3_EXPERIMENTAL_API: 1 | |
ZARR_V3_SHARDING: 1 | |
run: | | |
conda activate zarr-env | |
mkdir ~/blob_emulator | |
azurite -l ~/blob_emulator --debug debug.log 2>&1 > stdouterr.log & | |
pytest --cov=zarr --cov-config=pyproject.toml --doctest-plus --cov-report xml --cov=./ --timeout=300 | |
- uses: codecov/codecov-action@v4 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
with: | |
verbose: true # optional (default = false) |