unitcov

Universal Influenza-like Transmission Risk Based COVID-19 Incidence Prediction

Laboratory for Zero Knowledge Discovery, University of Chicago

---

Prediction for next week's covid cases and deaths

In the unitcov/forecast_pipeline folder, run notebook in exactly the following order

1. Run pipeline_data_gathering.ipynb
2. Run pipeline_GLM.ipynb
3. Run pipeline_forecast_case.ipynb and pipeline_forecast_death.ipynb

Alternatively, one can run forecast_for_next_week.ipynb which is a combination of the steps above.

The longform data frame ready for submission to the covid19 hub will be in the submission folder.