diff --git a/sbml/iFF708/medium.yaml b/sbml/iFF708/medium.yaml index 5b5274e..733222a 100644 --- a/sbml/iFF708/medium.yaml +++ b/sbml/iFF708/medium.yaml @@ -3,736 +3,526 @@ compartment: C_e compounds: - id: M_m162 reaction: R_ACALxtI - lower: 0.0 - upper: 0.0 - id: M_m162 reaction: R_ACALxtO lower: 0.0 - id: M_m172 reaction: R_ACxtI - lower: 0.0 - upper: 0.0 - id: M_m172 reaction: R_ACxtO lower: 0.0 - id: M_m186 reaction: R_ADNxtI - lower: 0.0 - upper: 0.0 - id: M_m186 reaction: R_ADNxtO lower: 0.0 - id: M_m191 reaction: R_ADxtI - lower: 0.0 - upper: 0.0 - id: M_m191 reaction: R_ADxtO lower: 0.0 - id: M_m193 reaction: R_AKGxtI - lower: 0.0 - upper: 0.0 - id: M_m193 reaction: R_AKGxtO lower: 0.0 - id: M_m195 reaction: R_ALAxtI - lower: 0.0 - upper: 0.0 - id: M_m195 reaction: R_ALAxtO lower: 0.0 - id: M_m214 reaction: R_AONAxtI - lower: 0.0 - upper: 0.0 - id: M_m214 reaction: R_AONAxtO lower: 0.0 - id: M_m215 reaction: R_ARABxtI - lower: 0.0 - upper: 0.0 - id: M_m215 reaction: R_ARABxtO lower: 0.0 - id: M_m216 reaction: R_ARGxtI - lower: 0.0 - upper: 0.0 - id: M_m216 reaction: R_ARGxtO lower: 0.0 - id: M_m217 reaction: R_ASNxtI - lower: 0.0 - upper: 0.0 - id: M_m217 reaction: R_ASNxtO lower: 0.0 - id: M_m218 reaction: R_ASPxtI - lower: 0.0 - upper: 0.0 - id: M_m218 reaction: R_ASPxtO lower: 0.0 - id: M_m219 reaction: R_ATNxtI - lower: 0.0 - upper: 0.0 - id: M_m219 reaction: R_ATNxtO lower: 0.0 - id: M_m232 reaction: R_BMxtI - lower: 0.0 - upper: 0.0 - id: M_m232 reaction: R_BMxtO lower: 0.0 - id: M_m233 reaction: R_BTxtI - lower: 0.0 - upper: 0.0 - id: M_m233 reaction: R_BTxtO lower: 0.0 - id: M_m236 reaction: R_C140xtI - lower: 0.0 - upper: 0.0 - id: M_m236 reaction: R_C140xtO lower: 0.0 - id: M_m238 reaction: R_C160xtI - lower: 0.0 - upper: 0.0 - id: M_m238 reaction: R_C160xtO lower: 0.0 - id: M_m239 reaction: R_C180xtI - lower: 0.0 - upper: 0.0 - id: M_m239 reaction: R_C180xtO lower: 0.0 - id: M_m259 reaction: R_CHOxtI - lower: 0.0 - upper: 0.0 - id: M_m259 reaction: R_CHOxtO lower: 0.0 - id: M_m262 reaction: R_CITxtI - lower: 0.0 - upper: 0.0 - id: M_m262 reaction: R_CITxtO lower: 0.0 - id: M_m267 reaction: R_CO2xtI - lower: 0.0 - upper: 0.0 - id: M_m267 reaction: R_CO2xtO lower: 0.0 - id: M_m274 reaction: R_CYSxtI - lower: 0.0 - upper: 0.0 - id: M_m274 reaction: R_CYSxtO lower: 0.0 - id: M_m275 reaction: R_CYTDxtI - lower: 0.0 - upper: 0.0 - id: M_m275 reaction: R_CYTDxtO lower: 0.0 - id: M_m278 reaction: R_CYTSxtI - lower: 0.0 - upper: 0.0 - id: M_m278 reaction: R_CYTSxtO lower: 0.0 - id: M_m282 reaction: R_DANNAxtI - lower: 0.0 - upper: 0.0 - id: M_m282 reaction: R_DANNAxtO lower: 0.0 - id: M_m286 reaction: R_DAxtI - lower: 0.0 - upper: 0.0 - id: M_m286 reaction: R_DAxtO lower: 0.0 - id: M_m290 reaction: R_DCxtI - lower: 0.0 - upper: 0.0 - id: M_m290 reaction: R_DCxtO lower: 0.0 - id: M_m321 reaction: R_DGxtI - lower: 0.0 - upper: 0.0 - id: M_m321 reaction: R_DGxtO lower: 0.0 - id: M_m329 reaction: R_DINxtI - lower: 0.0 - upper: 0.0 - id: M_m329 reaction: R_DINxtO lower: 0.0 - id: M_m331 reaction: R_DIPEPxtI - lower: 0.0 - upper: 0.0 - id: M_m331 reaction: R_DIPEPxtO lower: 0.0 - id: M_m352 reaction: R_DTTPxtI - lower: 0.0 - upper: 0.0 - id: M_m352 reaction: R_DTTPxtO lower: 0.0 - id: M_m353 reaction: R_DTxtI - lower: 0.0 - upper: 0.0 - id: M_m353 reaction: R_DTxtO lower: 0.0 - id: M_m357 reaction: R_DUxtI - lower: 0.0 - upper: 0.0 - id: M_m357 reaction: R_DUxtO lower: 0.0 - id: M_m366 reaction: R_ERGOxtI - lower: 0.0 - upper: 0.0 - id: M_m366 reaction: R_ERGOxtO lower: 0.0 - id: M_m371 reaction: R_ETHxtI - lower: 0.0 - upper: 0.0 - id: M_m371 reaction: R_ETHxtO lower: 0.0 - id: M_m383 reaction: R_FORxtI - lower: 0.0 - upper: 0.0 - id: M_m383 reaction: R_FORxtO lower: 0.0 - id: M_m384 reaction: R_FRUxtI - lower: 0.0 - upper: 0.0 - id: M_m384 reaction: R_FRUxtO lower: 0.0 - id: M_m385 reaction: R_FUCxtI - lower: 0.0 - upper: 0.0 - id: M_m385 reaction: R_FUCxtO lower: 0.0 - id: M_m388 reaction: R_FUMxtI - lower: 0.0 - upper: 0.0 - id: M_m388 reaction: R_FUMxtO lower: 0.0 - id: M_m389 reaction: R_GA6PxtI - lower: 0.0 - upper: 0.0 - id: M_m389 reaction: R_GA6PxtO lower: 0.0 - id: M_m390 reaction: R_GABAxtI - lower: 0.0 - upper: 0.0 - id: M_m390 reaction: R_GABAxtO lower: 0.0 - id: M_m398 reaction: R_GLACxtI - lower: 0.0 - upper: 0.0 - id: M_m398 reaction: R_GLACxtO lower: 0.0 - id: M_m399 reaction: R_GLALxtI - lower: 0.0 - upper: 0.0 - id: M_m399 reaction: R_GLALxtO lower: 0.0 - id: M_m400 reaction: R_GLAMxtI - lower: 0.0 - upper: 0.0 - id: M_m400 reaction: R_GLAMxtO lower: 0.0 - id: M_m401 reaction: R_GLCxtI - lower: 0.0 - upper: 0.0 - id: M_m401 reaction: R_GLCxtO lower: 0.0 - id: M_m402 reaction: R_GLNxtI - lower: 0.0 - upper: 0.0 - id: M_m402 reaction: R_GLNxtO lower: 0.0 - id: M_m403 reaction: R_GLTxtI - lower: 0.0 - upper: 0.0 - id: M_m403 reaction: R_GLTxtO lower: 0.0 - id: M_m408 reaction: R_GLUxtI - lower: 0.0 - upper: 0.0 - id: M_m408 reaction: R_GLUxtO lower: 0.0 - id: M_m420 reaction: R_GLYxtI - lower: 0.0 - upper: 0.0 - id: M_m420 reaction: R_GLYxtO lower: 0.0 - id: M_m409 reaction: R_GLxtI - lower: 0.0 - upper: 0.0 - id: M_m409 reaction: R_GLxtO lower: 0.0 - id: M_m422 reaction: R_GNxtI - lower: 0.0 - upper: 0.0 - id: M_m422 reaction: R_GNxtO lower: 0.0 - id: M_m423 reaction: R_GSNxtI - lower: 0.0 - upper: 0.0 - id: M_m423 reaction: R_GSNxtO lower: 0.0 - id: M_m437 reaction: R_HISxtI - lower: 0.0 - upper: 0.0 - id: M_m437 reaction: R_HISxtO lower: 0.0 - id: M_m445 reaction: R_HYXNxtI - lower: 0.0 - upper: 0.0 - id: M_m445 reaction: R_HYXNxtO lower: 0.0 - id: M_m448 reaction: R_ILExtI - lower: 0.0 - upper: 0.0 - id: M_m448 reaction: R_ILExtO lower: 0.0 - id: M_m457 reaction: R_INSxtI - lower: 0.0 - upper: 0.0 - id: M_m457 reaction: R_INSxtO lower: 0.0 - id: M_m469 reaction: R_KxtI - lower: 0.0 - upper: 0.0 - id: M_m469 reaction: R_KxtO lower: 0.0 - id: M_m474 reaction: R_LACxtI - lower: 0.0 - upper: 0.0 - id: M_m474 reaction: R_LACxtO lower: 0.0 - id: M_m489 reaction: R_LEUxtI - lower: 0.0 - upper: 0.0 - id: M_m489 reaction: R_LEUxtO lower: 0.0 - id: M_m532 reaction: R_LYSxtI - lower: 0.0 - upper: 0.0 - id: M_m532 reaction: R_LYSxtO lower: 0.0 - id: M_m541 reaction: R_MALxtI - lower: 0.0 - upper: 0.0 - id: M_m541 reaction: R_MALxtO lower: 0.0 - id: M_m544 reaction: R_MANxtI - lower: 0.0 - upper: 0.0 - id: M_m544 reaction: R_MANxtO lower: 0.0 - id: M_m547 reaction: R_MELIxtI - lower: 0.0 - upper: 0.0 - id: M_m547 reaction: R_MELIxtO lower: 0.0 - id: M_m553 reaction: R_METxtI - lower: 0.0 - upper: 0.0 - id: M_m553 reaction: R_METxtO lower: 0.0 - id: M_m554 reaction: R_MIxtI - lower: 0.0 - upper: 0.0 - id: M_m554 reaction: R_MIxtO lower: 0.0 - id: M_m555 reaction: R_MLTxtI - lower: 0.0 - upper: 0.0 - id: M_m555 reaction: R_MLTxtO lower: 0.0 - id: M_m556 reaction: R_MMETxtI - lower: 0.0 - upper: 0.0 - id: M_m556 reaction: R_MMETxtO lower: 0.0 - id: M_m557 reaction: R_MNTxtI - lower: 0.0 - upper: 0.0 - id: M_m557 reaction: R_MNTxtO lower: 0.0 - id: M_m558 reaction: R_MTHNxtI - lower: 0.0 - upper: 0.0 - id: M_m558 reaction: R_MTHNxtO lower: 0.0 - id: M_m591 reaction: R_NAxtI - lower: 0.0 - upper: 0.0 - id: M_m591 reaction: R_NAxtO lower: 0.0 - id: M_m596 reaction: R_NH3xtI - lower: 0.0 - upper: 0.0 - id: M_m596 reaction: R_NH3xtO lower: 0.0 - id: M_m605 reaction: R_NMNxtI - lower: 0.0 - upper: 0.0 - id: M_m605 reaction: R_NMNxtO lower: 0.0 - id: M_m607 reaction: R_O2xtI - lower: 0.0 - upper: 0.0 - id: M_m607 reaction: R_O2xtO lower: 0.0 - id: M_m612 reaction: R_OGTxtI - lower: 0.0 - upper: 0.0 - id: M_m612 reaction: R_OGTxtO lower: 0.0 - id: M_m616 reaction: R_OPEPxtI - lower: 0.0 - upper: 0.0 - id: M_m616 reaction: R_OPEPxtO lower: 0.0 - id: M_m619 reaction: R_ORNxtI - lower: 0.0 - upper: 0.0 - id: M_m619 reaction: R_ORNxtO lower: 0.0 - id: M_m645 reaction: R_PAPxtI - lower: 0.0 - upper: 0.0 - id: M_m645 reaction: R_PAPxtO lower: 0.0 - id: M_m647 reaction: R_PEPTxtI - lower: 0.0 - upper: 0.0 - id: M_m647 reaction: R_PEPTxtO lower: 0.0 - id: M_m650 reaction: R_PHExtI - lower: 0.0 - upper: 0.0 - id: M_m650 reaction: R_PHExtO lower: 0.0 - id: M_m667 reaction: R_PIMExtI - lower: 0.0 - upper: 0.0 - id: M_m667 reaction: R_PIMExtO lower: 0.0 - id: M_m668 reaction: R_PIxtI - lower: 0.0 - upper: 0.0 - id: M_m668 reaction: R_PIxtO lower: 0.0 - id: M_m669 reaction: R_PNTOxtI - lower: 0.0 - upper: 0.0 - id: M_m669 reaction: R_PNTOxtO lower: 0.0 - id: M_m676 reaction: R_PROxtI - lower: 0.0 - upper: 0.0 - id: M_m676 reaction: R_PROxtO lower: 0.0 - id: M_m692 reaction: R_PYRxtI - lower: 0.0 - upper: 0.0 - id: M_m692 reaction: R_PYRxtO lower: 0.0 - id: M_m697 reaction: R_RFLAVxtI - lower: 0.0 - upper: 0.0 - id: M_m697 reaction: R_RFLAVxtO lower: 0.0 - id: M_m700 reaction: R_RIBxtI - lower: 0.0 - upper: 0.0 - id: M_m700 reaction: R_RIBxtO lower: 0.0 - id: M_m702 reaction: R_RMNxtI - lower: 0.0 - upper: 0.0 - id: M_m702 reaction: R_RMNxtO lower: 0.0 - id: M_m711 reaction: R_SAMxtI - lower: 0.0 - upper: 0.0 - id: M_m711 reaction: R_SAMxtO lower: 0.0 - id: M_m714 reaction: R_SERxtI - lower: 0.0 - upper: 0.0 - id: M_m714 reaction: R_SERxtO lower: 0.0 - id: M_m719 reaction: R_SLFxtI - lower: 0.0 - upper: 0.0 - id: M_m719 reaction: R_SLFxtO lower: 0.0 - id: M_m725 reaction: R_SORxtI - lower: 0.0 - upper: 0.0 - id: M_m725 reaction: R_SORxtO lower: 0.0 - id: M_m731 reaction: R_SPRMxtI - lower: 0.0 - upper: 0.0 - id: M_m731 reaction: R_SPRMxtO lower: 0.0 - id: M_m740 reaction: R_SUCCxtI - lower: 0.0 - upper: 0.0 - id: M_m740 reaction: R_SUCCxtO lower: 0.0 - id: M_m742 reaction: R_SUCxtI - lower: 0.0 - upper: 0.0 - id: M_m742 reaction: R_SUCxtO lower: 0.0 - id: M_m757 reaction: R_THMxtI - lower: 0.0 - upper: 0.0 - id: M_m757 reaction: R_THMxtO lower: 0.0 - id: M_m758 reaction: R_THRxtI - lower: 0.0 - upper: 0.0 - id: M_m758 reaction: R_THRxtO lower: 0.0 - id: M_m761 reaction: R_THYxtI - lower: 0.0 - upper: 0.0 - id: M_m761 reaction: R_THYxtO lower: 0.0 - id: M_m764 reaction: R_TRExtI - lower: 0.0 - upper: 0.0 - id: M_m764 reaction: R_TRExtO lower: 0.0 - id: M_m772 reaction: R_TRPxtI - lower: 0.0 - upper: 0.0 - id: M_m772 reaction: R_TRPxtO lower: 0.0 - id: M_m773 reaction: R_TYRxtI - lower: 0.0 - upper: 0.0 - id: M_m773 reaction: R_TYRxtO lower: 0.0 - id: M_m782 reaction: R_URAxtI - lower: 0.0 - upper: 0.0 - id: M_m782 reaction: R_URAxtO lower: 0.0 - id: M_m785 reaction: R_UREAxtI - lower: 0.0 - upper: 0.0 - id: M_m785 reaction: R_UREAxtO lower: 0.0 - id: M_m787 reaction: R_URIxtI - lower: 0.0 - upper: 0.0 - id: M_m787 reaction: R_URIxtO lower: 0.0 - id: M_m790 reaction: R_VALxtI - lower: 0.0 - upper: 0.0 - id: M_m790 reaction: R_VALxtO lower: 0.0 - id: M_m794 reaction: R_XANxtI - lower: 0.0 - upper: 0.0 - id: M_m794 reaction: R_XANxtO lower: 0.0 - id: M_m798 reaction: R_ZYMSTxtI - lower: 0.0 - upper: 0.0 - id: M_m798 reaction: R_ZYMSTxtO lower: 0.0