R version 3.2.2 (2015-08-14) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-redhat-linux-gnu (64-bit)

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> 
> ss <- function(TP,TN,FP,FN,bet=1){
+ 	if (is.na(TP)) TP=0
+ 	if (is.na(TN)) TN=0
+ 	if (is.na(FP)) FP=0
+ 	if (is.na(FN)) FN=0
+ 	sen=TP/(TP+FN)
+ 	spe=TN/(TN+FP)
+ 	pre=TP/(TP+FP)
+ 	f = (1+bet^2)*pre*sen/(bet^2*pre+sen)
+ 	return(c(sen,spe,pre,f))
+ }
> 
> log_up <- function(x){
+ 	ids = which(x<=0)
+ 	x[ids] = 0.0000001
+ 	return(log10(x))
+ }
> library(ggplot2)
> 
> args = (commandArgs(trailingOnly = T))
> print (args)
[1] "finput=\"giremi_output.res\""  
[2] "fout=\"giremi_output.res.res\""
> for (i in 1:length(args)){
+ 	eval(parse(text=args[[i]]))
+ }
> 
> #dat <- read.table(file=finput,header=F,row.names=1,comment.char="")
> dat <- read.table(file=finput,header=T,comment.char="")
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings,  : 
  line 382 did not have 24 elements
Calls: read.table -> scan
Execution halted