{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":594170389,"defaultBranch":"main","name":"bioinformatics-software","ownerLogin":"zhukovanadezhda","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-01-27T19:08:00.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/102734471?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1689954085.0","currentOid":""},"activityList":{"items":[{"before":"6956f9613e922c1be72b727631ad9f7b1d88ec65","after":"79790382e35c2b2ea8283963781e22d4fdd95497","ref":"refs/heads/main","pushedAt":"2024-04-08T10:14:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhukovanadezhda","name":"Nadezhda Zhukova","path":"/zhukovanadezhda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102734471?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"cb58f52a3b3e9f12e6d6b1f12ca27bb5489b85ec","after":"6956f9613e922c1be72b727631ad9f7b1d88ec65","ref":"refs/heads/main","pushedAt":"2023-08-01T14:25:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Rename output files","shortMessageHtmlLink":"Rename output files"}},{"before":"d6826fc3e8fa63fb48bd6ccd3126fcc21136f1f6","after":"cb58f52a3b3e9f12e6d6b1f12ca27bb5489b85ec","ref":"refs/heads/main","pushedAt":"2023-08-01T14:24:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Update notebooks input / ouput file","shortMessageHtmlLink":"Update notebooks input / ouput file"}},{"before":"31b0a9d12f386ede4d6bc99c22116793130659e9","after":"d6826fc3e8fa63fb48bd6ccd3126fcc21136f1f6","ref":"refs/heads/main","pushedAt":"2023-08-01T14:24:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Remove unnecessary file","shortMessageHtmlLink":"Remove unnecessary file"}},{"before":"03c758862256a548f8c154ee98075e3abef65549","after":"31b0a9d12f386ede4d6bc99c22116793130659e9","ref":"refs/heads/main","pushedAt":"2023-08-01T10:06:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Clean notebook","shortMessageHtmlLink":"Clean notebook"}},{"before":"95ee16dea99f18f955c9c77d76f761bb9038bc3d","after":"03c758862256a548f8c154ee98075e3abef65549","ref":"refs/heads/main","pushedAt":"2023-07-31T09:25:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Clean Software Heritage plot","shortMessageHtmlLink":"Clean Software Heritage plot"}},{"before":"522c5d121e7f99c61f36869bff4985ed73a5cbe1","after":"95ee16dea99f18f955c9c77d76f761bb9038bc3d","ref":"refs/heads/main","pushedAt":"2023-07-31T07:47:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}},{"before":"baf1dfd6667f25bd531a11127ddfe7cc00fdaba6","after":"522c5d121e7f99c61f36869bff4985ed73a5cbe1","ref":"refs/heads/main","pushedAt":"2023-07-30T18:57:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Fix empty string value for csv import","shortMessageHtmlLink":"Fix empty string value for csv import"}},{"before":"c31c89bb96c66822987e00e9ce477f58a8165f6e","after":"baf1dfd6667f25bd531a11127ddfe7cc00fdaba6","ref":"refs/heads/main","pushedAt":"2023-07-30T18:37:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Update column name","shortMessageHtmlLink":"Update column name"}},{"before":"aa87515b5b194bb93531e75a3098d0ef5d46bcf2","after":"c31c89bb96c66822987e00e9ce477f58a8165f6e","ref":"refs/heads/main","pushedAt":"2023-07-30T18:37:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Use same dataframe for the entire analysis","shortMessageHtmlLink":"Use same dataframe for the entire analysis"}},{"before":"26dc3e13f4da1d247732f6147b48ae73bf565a91","after":"aa87515b5b194bb93531e75a3098d0ef5d46bcf2","ref":"refs/heads/main","pushedAt":"2023-07-30T15:14:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Factorize code","shortMessageHtmlLink":"Factorize code"}},{"before":"f5f13c21aaca476a4e838d384e964a09d6f1d507","after":"26dc3e13f4da1d247732f6147b48ae73bf565a91","ref":"refs/heads/main","pushedAt":"2023-07-28T17:42:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Reorder module import","shortMessageHtmlLink":"Reorder module import"}},{"before":"455930dfb3a1de8e047d7e066c3833f04076a071","after":"f5f13c21aaca476a4e838d384e964a09d6f1d507","ref":"refs/heads/main","pushedAt":"2023-07-28T17:36:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"User lxml to extract abstract text","shortMessageHtmlLink":"User lxml to extract abstract text"}},{"before":"3d9b4fecde4091cfcfcefbeb47cd6366c8b4fa18","after":"455930dfb3a1de8e047d7e066c3833f04076a071","ref":"refs/heads/main","pushedAt":"2023-07-28T16:14:47.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Document url cleaning procedure","shortMessageHtmlLink":"Document url cleaning procedure"}},{"before":"a57e007f47bdc5ffc6127ac72ccc78053a3c8ed0","after":"3d9b4fecde4091cfcfcefbeb47cd6366c8b4fa18","ref":"refs/heads/main","pushedAt":"2023-07-28T12:05:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Add progress bar for pubmed xml parsing","shortMessageHtmlLink":"Add progress bar for pubmed xml parsing"}},{"before":"369086ab6ca828d1a6e93fea698c5ef0837a241a","after":"a57e007f47bdc5ffc6127ac72ccc78053a3c8ed0","ref":"refs/heads/main","pushedAt":"2023-07-28T11:59:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Improve abstract scrapping with flat dictionnaries","shortMessageHtmlLink":"Improve abstract scrapping with flat dictionnaries"}},{"before":"fbd2939a43baca31bd9173690e4a34957412e54a","after":"369086ab6ca828d1a6e93fea698c5ef0837a241a","ref":"refs/heads/main","pushedAt":"2023-07-28T11:59:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Ignore logs","shortMessageHtmlLink":"Ignore logs"}},{"before":"b3cd3d6cbefcb2b1383b190ac7646b21b532701c","after":"fbd2939a43baca31bd9173690e4a34957412e54a","ref":"refs/heads/main","pushedAt":"2023-07-28T10:13:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Improve extraction from pubmed xml","shortMessageHtmlLink":"Improve extraction from pubmed xml"}},{"before":"dab4659551147259d3c1519dd31329ee4e727586","after":"b3cd3d6cbefcb2b1383b190ac7646b21b532701c","ref":"refs/heads/main","pushedAt":"2023-07-28T10:12:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Remove tmp dir","shortMessageHtmlLink":"Remove tmp dir"}},{"before":"2fa81fd01e417e7a6d5c93792197fa55ece700f6","after":"dab4659551147259d3c1519dd31329ee4e727586","ref":"refs/heads/main","pushedAt":"2023-07-28T09:01:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Ignore dev notebooks","shortMessageHtmlLink":"Ignore dev notebooks"}},{"before":"c003bdfe569dbcaa41bfcd3fdf9054bbe955ca2f","after":"2fa81fd01e417e7a6d5c93792197fa55ece700f6","ref":"refs/heads/main","pushedAt":"2023-07-27T17:05:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Allow append to log file","shortMessageHtmlLink":"Allow append to log file"}},{"before":"ca2f3aa56a81f33359a0eec923cbe1193fcc8f5b","after":"c003bdfe569dbcaa41bfcd3fdf9054bbe955ca2f","ref":"refs/heads/main","pushedAt":"2023-07-27T16:59:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Clean code","shortMessageHtmlLink":"Clean code"}},{"before":"1f3042838916cb3759dbcaad6c241e98aa48d2fa","after":"ca2f3aa56a81f33359a0eec923cbe1193fcc8f5b","ref":"refs/heads/main","pushedAt":"2023-07-21T16:12:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Explain how to get API keys for PubMed and GitHub","shortMessageHtmlLink":"Explain how to get API keys for PubMed and GitHub"}},{"before":null,"after":"d2474219b472ba7f8c13841bce256d0e8a7b94bb","ref":"refs/heads/snakemake-profile","pushedAt":"2023-07-21T15:41:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pierrepo","name":"Pierre Poulain","path":"/pierrepo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/733861?s=80&v=4"},"commit":{"message":"Create Snakemake profile","shortMessageHtmlLink":"Create Snakemake profile"}},{"before":"65ac076a2415d016ce133b1b2564ecc08ffaf6a7","after":"1f3042838916cb3759dbcaad6c241e98aa48d2fa","ref":"refs/heads/main","pushedAt":"2023-07-21T14:56:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhukovanadezhda","name":"Nadezhda Zhukova","path":"/zhukovanadezhda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102734471?s=80&v=4"},"commit":{"message":"Fix github query","shortMessageHtmlLink":"Fix github query"}},{"before":"a2f7a50b89954911c00141518f49dac4eea72942","after":"65ac076a2415d016ce133b1b2564ecc08ffaf6a7","ref":"refs/heads/main","pushedAt":"2023-07-21T13:33:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhukovanadezhda","name":"Nadezhda Zhukova","path":"/zhukovanadezhda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102734471?s=80&v=4"},"commit":{"message":"fixed dates in query_pubmed function","shortMessageHtmlLink":"fixed dates in query_pubmed function"}},{"before":"cd956e8f49f6499f0b88547d90d9c15820317933","after":"a2f7a50b89954911c00141518f49dac4eea72942","ref":"refs/heads/main","pushedAt":"2023-07-21T12:58:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhukovanadezhda","name":"Nadezhda Zhukova","path":"/zhukovanadezhda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102734471?s=80&v=4"},"commit":{"message":"added results folder","shortMessageHtmlLink":"added results folder"}},{"before":"168fe0e4b48982a4952939e36a8d6827ac42dc98","after":"cd956e8f49f6499f0b88547d90d9c15820317933","ref":"refs/heads/main","pushedAt":"2023-07-21T12:51:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhukovanadezhda","name":"Nadezhda Zhukova","path":"/zhukovanadezhda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102734471?s=80&v=4"},"commit":{"message":"Update .gitignore","shortMessageHtmlLink":"Update .gitignore"}},{"before":"b5ba58dbf7a8eaf6f2da1a1d3e05d09c72cce9ea","after":"168fe0e4b48982a4952939e36a8d6827ac42dc98","ref":"refs/heads/main","pushedAt":"2023-07-21T12:49:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"zhukovanadezhda","name":"Nadezhda Zhukova","path":"/zhukovanadezhda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102734471?s=80&v=4"},"commit":{"message":"added notebook","shortMessageHtmlLink":"added notebook"}},{"before":"7c840b89d78a03df4c4c15d55c5c23c632d59974","after":"b5ba58dbf7a8eaf6f2da1a1d3e05d09c72cce9ea","ref":"refs/heads/main","pushedAt":"2023-07-21T08:49:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhukovanadezhda","name":"Nadezhda Zhukova","path":"/zhukovanadezhda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/102734471?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEKsX8YAA","startCursor":null,"endCursor":null}},"title":"Activity ยท zhukovanadezhda/bioinformatics-software"}