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Warning when running with pysam 0.23.1 leading to non-zero exit code

Status: Open.

#270 In open2c/pairtools;

· prototaxites opened on May 30, 2025

<code>chrom1</code>, <code>chrom2</code> and <code>pair_type</code> fields are now required in pairs file header

Status: Open.

#264 In open2c/pairtools;

· js2264 opened on Feb 19, 2025

Identical read_len1 and read_len2 reported with different real read lengths in R1&amp;2 pairs

Status: Open.

#262 In open2c/pairtools;

· Phlya opened on Jan 14, 2025

Could support single cell Hi-C ?

Status: Open.

#255 In open2c/pairtools;

· liufuyan2016 opened on Nov 15, 2024

pairtools:Empty of fully duplicated library, can't estimate complexity

Status: Open.

#254 In open2c/pairtools;

· Wong718 opened on Nov 4, 2024

Pairtools phase - issue with phasing

Status: Open.

#253 In open2c/pairtools;

· ddepierre opened on Oct 11, 2024

convert pairtools result to dense matrix

Status: Open.

#252 In open2c/pairtools;

· BenxiaHu opened on Sep 30, 2024

Python 3.13 removes pipes

Status: Open.

#250 In open2c/pairtools;

· stefanor opened on Sep 13, 2024

single-end mode is broken in v1.1.0

Status: Open.

#247 In open2c/pairtools;

· niederhuth opened on Sep 4, 2024

Support for lowercase SAM tags in pairtools parse2

Status: Open.

#245 In open2c/pairtools;

· LuJiansen opened on Jul 30, 2024

Extracting contact matrices from pairs file

Status: Open.

#243 In open2c/pairtools;

· arodel21 opened on Jul 13, 2024

pairtools dedup: invalid value encountered in divide

Status: Open.

#242 In open2c/pairtools;

· gbdnorden opened on Jun 15, 2024