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protein-protein-interactions

Here are 13 public repositories matching this topic...

DeepRank / Deeprank-GNN

Graph Network for protein-protein interface

graph scoring protein pssm utrecht-university graph-networks protein-protein-interactions interface-classification

Updated Mar 22, 2024
Python

DeepInteract

BioinfoMachineLearning / DeepInteract

A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)

docker machine-learning bioinformatics deep-learning proteins transformers geometric-deep-learning graph-neural-networks protein-protein-interactions

Updated Jun 20, 2022
Python

anton-bushuiev / PPIformer

Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)

machine-learning proteins protein-design protein-protein-interactions equivariant-representations

Updated Jan 16, 2025
Jupyter Notebook

Bhattacharya-Lab / EquiPPIS

E(3) equivariant graph neural network for PPI site prediction

deep-learning neural-network equivariance protein-protein-interactions

Updated Sep 18, 2023
Python

walterlab-HMS / SPOC

Code repository for the SPOC tool for scoring binary AF-M predicitons.

structure-prediction protein-protein-interactions alphafold-multimer

Updated Apr 27, 2025
Perl

marcottelab / super.complex_website_humap

Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM

community-detection supervised-machine-learning protein-protein-interaction-network protein-complexes protein-protein-interactions protein-complex-identification

Updated Jul 3, 2022
HTML

AspirinCode / QEPPI-community

Community-Maintained Version of mordred (Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions)

protein-protein-interactions qeppi

Updated Jun 17, 2025
Jupyter Notebook

neksa / interactome

Structural Interactome pipeline

structural-biology ppi structural-bioinformatics protein-protein-interactions

Updated Oct 16, 2019
JavaScript

marcottelab / RL_humap_prediction

Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL

reinforcement-learning community-detection protein-protein-interaction-network protein-complexes protein-protein-interactions protein-complex-identification

Updated Jun 22, 2022
HTML

bio2bel / hippie

Convert PPIs in HIPPIE to BEL

biological-expression-language protein-protein-interactions

Updated Aug 26, 2019
Python

Ilia-Abolhasani / co-worker-proteins-in-gene-ontology

Analyzing biological networks using statistical testing to uncover significant differences in protein distributions based on functional relationships.

null-hypothesis protein-protein-interactions statistical-testing

Updated May 26, 2023
Jupyter Notebook

Emad-COMBINE-lab / intrepppid

Incorporating Triplet Error for Predicting PPIs using Deep Learning

deep-learning computational-biology protein-protein-interaction cross-species protein-protein-interactions

Updated Feb 4, 2025
Python

Emad-COMBINE-lab / ppi_origami

Tools for processing and analysing PPI datasets

protein-protein-interaction protein-protein-interactions

Updated Jun 2, 2024
Python

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