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@Bhattacharya-Lab

Bhattacharya Lab

Debswapna Bhattacharya's Research Group in the CS Department at Virginia Tech

Popular repositories Loading

  1. PolyFold PolyFold Public

    An interactive visual simulator for distance-based protein folding

    Java 24 5

  2. EquiPNAS EquiPNAS Public

    pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

    Python 22 2

  3. CASP15 CASP15 Public

    CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods

    10

  4. EquiPPIS EquiPPIS Public

    E(3) equivariant graph neural network for PPI site prediction

    Python 9 2

  5. ProRNA3D-single ProRNA3D-single Public

    Single-sequence protein-RNA complex structure prediction with biological language models

    Python 9

  6. QDeep QDeep Public

    Distance-based protein model quality estimation using deep ResNets

    Python 8 5

Repositories

Showing 10 of 15 repositories
  • PackBench Public
    Python 0 GPL-3.0 0 1 0 Updated Jul 2, 2025
  • RNAbpFlow Public
    Python 6 GPL-3.0 0 1 0 Updated May 19, 2025
  • lociPARSE Public

    locality-aware invariant Point Attention-based RNA ScorEr

    Python 6 GPL-3.0 0 1 0 Updated Nov 11, 2024
  • ProRNA3D-single Public

    Single-sequence protein-RNA complex structure prediction with biological language models

    Python 9 GPL-3.0 0 0 0 Updated Aug 23, 2024
  • RNAmark Public

    The landscape of RNA 3D structure modeling with transformer networks

    Shell 1 GPL-3.0 0 0 0 Updated Jul 21, 2024
  • EquiPNAS Public

    pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

    Python 22 GPL-3.0 2 3 0 Updated Apr 24, 2024
  • CASP15 Public

    CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods

    10 GPL-3.0 0 2 0 Updated Dec 13, 2023
  • EquiPPIS Public

    E(3) equivariant graph neural network for PPI site prediction

    Python 9 GPL-3.0 2 1 0 Updated Sep 18, 2023
  • PIQLE Public

    Protein-protein interface quality estimation by deep graph learning

    Python 7 GPL-3.0 2 2 0 Updated Aug 8, 2023
  • rrQNet Public

    Protein contact map quality estimation by evolutionary reconciliation

    Python 1 GPL-3.0 0 0 0 Updated Jul 21, 2022

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