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Running brew install libadwaita on Ubuntu 22.04.5 LTS terminates with a 'Too many open files' error, but rerunning the install command succeeds #19866

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valeriyvan opened this issue May 1, 2025 · 1 comment
Open
3 tasks done

Running brew install libadwaita on Ubuntu 22.04.5 LTS terminates with a 'Too many open files' error, but rerunning the install command succeeds #19866

valeriyvan opened this issue May 1, 2025 · 1 comment
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@Bo98
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in progress Maintainers are working on this

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@valeriyvan
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brew doctor output

brew doctor
Your system is ready to brew.

Verification

  • My "brew doctor output" above says Your system is ready to brew. and am still able to reproduce my issue.
  • I ran brew update twice and am still able to reproduce my issue.
  • This issue's title and/or description do not reference a single formula e.g. brew install wget. If they do, open an issue at https://github.com/Homebrew/homebrew-core/issues/new/choose instead.

brew config output

brew config
HOMEBREW_VERSION: 4.5.0
ORIGIN: https://github.com/Homebrew/brew
HEAD: 3332d3331b56e0aff675d3816d8ebfe564075299
Last commit: 2 days ago
Branch: stable
Core tap JSON: 01 May 13:03 UTC
HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew
HOMEBREW_CASK_OPTS: []
HOMEBREW_DISPLAY: :0
HOMEBREW_MAKE_JOBS: 8
Homebrew Ruby: 3.4.3 => /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.4.3/bin/ruby
CPU: octa-core 64-bit skylake
Clang: 20.1.3
Git: 2.34.1 => /bin/git
Curl: 7.81.0 => /bin/curl
Kernel: Linux 6.8.0-58-generic x86_64 GNU/Linux
OS: Ubuntu 22.04.5 LTS (jammy)
Host glibc: 2.35
/usr/bin/gcc: 11.4.0
/usr/bin/ruby: N/A
glibc: N/A
gcc@11: N/A
gcc: N/A
xorg: N/A

What were you trying to do (and why)?

Trying to install libadwaita

What happened (include all command output)?

First install fails with error about too many open files, successive install succeeds

What did you expect to happen?

I expect install succeed without error about too many open files

Step-by-step reproduction instructions (by running brew commands)

On Ubuntu
1. Install brew on Ubuntu according to Homebrew website.
2. Run brew install libadwaita
@valeriyvan valeriyvan changed the title brew install libadwaita on Ubuntu 22.04.5 LTS terminates with error Too many open files, successive install command succeeds Running brew install libadwaita on Ubuntu 22.04.5 LTS terminates with a 'Too many open files' error, but rerunning the install command succeeds May 1, 2025
@Bo98 Bo98 self-assigned this May 2, 2025
@MikeMcQuaid MikeMcQuaid added the in progress Maintainers are working on this label May 2, 2025
@abitrolly
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Same here on Fedora 42 for brew install spack.

Full output 
✗ brew install spack
==> Auto-updating Homebrew...
Adjust how often this is run with HOMEBREW_AUTO_UPDATE_SECS or disable with
HOMEBREW_NO_AUTO_UPDATE. Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
==> Auto-updated Homebrew!
==> Updated Homebrew from 4.5.2 (f4375b0750) to 4.5.3 (0cd1e6ca5b).
Updated 2 taps (homebrew/core and homebrew/cask).
==> New Formulae
addons-linter           erlang@27               gcli                    libpq@16                polypolish              s6-rc                   sylph
autocycler              execline                hyper-mcp               miniprot                qnm                     skalibs                 trimal
bsc                     fastga                  kraken2                 oxen                    rasusa                  skani                   webdav
elf2uf2-rs              gcc@14                  libbsc                  pdtm                    ropebwt3                style-dictionary        zsh-history-enquirer

You have 57 outdated formulae installed.


The 4.5.3 changelog can be found at:
  https://github.com/Homebrew/brew/releases/tag/4.5.3
==> Downloading https://ghcr.io/v2/homebrew/core/spack/manifests/0.23.1
################################################################################################################################################################# 100.0%
==> Fetching dependencies for spack: python@3.13
==> Downloading https://ghcr.io/v2/homebrew/core/python/3.13/manifests/3.13.3_1
################################################################################################################################################################# 100.0%
==> Fetching dependencies for python@3.13: mpdecimal, ca-certificates, openssl@3, sqlite, xz, expat and libffi
==> Downloading https://ghcr.io/v2/homebrew/core/mpdecimal/manifests/4.0.1
################################################################################################################################################################# 100.0%
==> Fetching mpdecimal
==> Downloading https://ghcr.io/v2/homebrew/core/mpdecimal/blobs/sha256:f540928b0baae439b6b7bbbb54aa0b0d8fda3631a2fb46c1d1ccd6bf9c2b5389
################################################################################################################################################################# 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/ca-certificates/manifests/2025-05-20
################################################################################################################################################################# 100.0%
==> Fetching ca-certificates
==> Downloading https://ghcr.io/v2/homebrew/core/ca-certificates/blobs/sha256:dda1100e7f994081a593d6a5e422451bfa20037e29667ed2b79f011ffc9288a7
################################################################################################################################################################# 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/openssl/3/manifests/3.5.0
################################################################################################################################################################# 100.0%
==> Fetching openssl@3
==> Downloading https://ghcr.io/v2/homebrew/core/openssl/3/blobs/sha256:178ae44b213319b0aa9e6d7b41772705099f50bd6b5de4ba1e6ae526e25af37a
################################################################################################################################################################# 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/sqlite/manifests/3.49.2
################################################################################################################################################################# 100.0%
==> Fetching sqlite
==> Downloading https://ghcr.io/v2/homebrew/core/sqlite/blobs/sha256:347e2e03572231f7045186c692844fe05fb33856c578af85eab861790385065c
################################################################################################################################################################# 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/xz/manifests/5.8.1
################################################################################################################################################################# 100.0%
==> Fetching xz
==> Downloading https://ghcr.io/v2/homebrew/core/xz/blobs/sha256:9ee1ff38fcc213fdefd262be65a06669f3e0118a2bd5fb387147ebe884f94413
################################################################################################################################################################# 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/expat/manifests/2.7.1
################################################################################################################################################################# 100.0%
==> Fetching expat
==> Downloading https://ghcr.io/v2/homebrew/core/expat/blobs/sha256:58ff2ade2b1d0b3de72558f92507b8bfc9bdcdc2fce5c5e33e080dfffff9b83c
################################################################################################################################################################# 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/libffi/manifests/3.4.8
################################################################################################################################################################# 100.0%
==> Fetching libffi
==> Downloading https://ghcr.io/v2/homebrew/core/libffi/blobs/sha256:c3dd4f7ce49728e37e9f8f868a8b85bdca6279b2f7781feb96b9e4bb400c18a0
################################################################################################################################################################# 100.0%
==> Fetching python@3.13
==> Downloading https://ghcr.io/v2/homebrew/core/python/3.13/blobs/sha256:9d6fcd14d185e1c4ca5cdada7941749ce18211d6c328e8abb4e4e3bf0061303f
################################################################################################################################################################# 100.0%
==> Fetching spack
==> Downloading https://ghcr.io/v2/homebrew/core/spack/blobs/sha256:e86a9198a69c530a065637ceba3eb6d5133833879c406967deac53743659692b
################################################################################################################################################################# 100.0%
==> Installing dependencies for spack: python@3.13
==> Installing spack dependency: python@3.13
==> Downloading https://ghcr.io/v2/homebrew/core/python/3.13/manifests/3.13.3_1
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/77450331a220e3a27513473b738fa0a51fe02647f87c6bb473ba9f8b9f56154f--python@3.13-3.13.3_1.bottle_manifest.json
==> Installing dependencies for python@3.13: mpdecimal, ca-certificates, openssl@3, sqlite, xz, expat and libffi
==> Installing python@3.13 dependency: mpdecimal
==> Downloading https://ghcr.io/v2/homebrew/core/mpdecimal/manifests/4.0.1
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/dbbf60721dc54b6215f6c0988496331d4110a2a358da867a1129cd84b8166b31--mpdecimal-4.0.1.bottle_manifest.json
==> Pouring mpdecimal--4.0.1.x86_64_linux.bottle.tar.gz
🍺  /home/linuxbrew/.linuxbrew/Cellar/mpdecimal/4.0.1: 22 files, 802.5KB
==> Installing python@3.13 dependency: ca-certificates
==> Downloading https://ghcr.io/v2/homebrew/core/ca-certificates/manifests/2025-05-20
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/bc18acc15e0abddc102f828b57a29cfdbec1b6b002db37ad12bad9dbf0e9d12f--ca-certificates-2025-05-20.bottle_manifest.json
==> Pouring ca-certificates--2025-05-20.all.bottle.tar.gz
🍺  /home/linuxbrew/.linuxbrew/Cellar/ca-certificates/2025-05-20: 4 files, 241.3KB
==> Installing python@3.13 dependency: openssl@3
==> Downloading https://ghcr.io/v2/homebrew/core/openssl/3/manifests/3.5.0
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/d3c8243df37f69247721b1d8a6c51e1a8afd6664b832423921ffd99bb2bb381a--openssl@3-3.5.0.bottle_manifest.json
==> Pouring openssl@3--3.5.0.x86_64_linux.bottle.tar.gz
🍺  /home/linuxbrew/.linuxbrew/Cellar/openssl@3/3.5.0: 7,573 files, 42.5MB
==> Installing python@3.13 dependency: sqlite
==> Downloading https://ghcr.io/v2/homebrew/core/sqlite/manifests/3.49.2
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/38c6b6d9ed9c5dd506ca6e5bf1c17a218fe16e8374e9b3f29e27d815dcab9497--sqlite-3.49.2.bottle_manifest.json
==> Pouring sqlite--3.49.2.x86_64_linux.bottle.tar.gz
🍺  /home/linuxbrew/.linuxbrew/Cellar/sqlite/3.49.2: 13 files, 6MB
==> Installing python@3.13 dependency: xz
==> Downloading https://ghcr.io/v2/homebrew/core/xz/manifests/5.8.1
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/86a115cc1d43ff8a480fd907f812e70a403e1675d8a7223f61bbb08cbd2adc27--xz-5.8.1.bottle_manifest.json
==> Pouring xz--5.8.1.x86_64_linux.bottle.tar.gz
🍺  /home/linuxbrew/.linuxbrew/Cellar/xz/5.8.1: 97 files, 2.6MB
==> Installing python@3.13 dependency: expat
==> Downloading https://ghcr.io/v2/homebrew/core/expat/manifests/2.7.1
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/09efb27f4cd66decc2e0f393e7f9292c729064e5c939cd8191f81fc000c3947a--expat-2.7.1.bottle_manifest.json
==> Pouring expat--2.7.1.x86_64_linux.bottle.tar.gz
🍺  /home/linuxbrew/.linuxbrew/Cellar/expat/2.7.1: 23 files, 921KB
==> Installing python@3.13 dependency: libffi
==> Downloading https://ghcr.io/v2/homebrew/core/libffi/manifests/3.4.8
Already downloaded: /home/anatoli/.cache/Homebrew/downloads/8898311b301bbcb1a886c89fba2b17479f52778f5a10d4bee0eb0c9ac5805950--libffi-3.4.8.bottle_manifest.json
==> Pouring libffi--3.4.8.x86_64_linux.bottle.tar.gz
🍺  /home/linuxbrew/.linuxbrew/Cellar/libffi/3.4.8: 19 files, 791.6KB
==> Installing python@3.13
==> Pouring python@3.13--3.13.3_1.x86_64_linux.bottle.tar.gz

Warning: These files were overwritten during the `brew link` step:
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/__main__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/__pip-runner__.py
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/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/truststore/_windows.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/truststore/py.typed
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/typing_extensions.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/_collections.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/_version.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/connection.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/connectionpool.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/_appengine_environ.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/_securetransport/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/_securetransport/bindings.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/_securetransport/low_level.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/appengine.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/ntlmpool.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/pyopenssl.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/securetransport.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/contrib/socks.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/exceptions.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/fields.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/filepost.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/packages/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/packages/backports/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/packages/backports/makefile.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/packages/backports/weakref_finalize.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/packages/six.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/poolmanager.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/request.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/response.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/connection.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/proxy.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/queue.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/request.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/response.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/retry.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/ssl_.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/ssl_match_hostname.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/ssltransport.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/timeout.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/url.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/urllib3/util/wait.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/_vendor/vendor.txt
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/pip/py.typed
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/__main__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/_bdist_wheel.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/_setuptools_logging.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/bdist_wheel.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/cli/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/cli/convert.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/cli/pack.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/cli/tags.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/cli/unpack.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/macosx_libfile.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/metadata.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/util.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/LICENSE
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/LICENSE.APACHE
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/LICENSE.BSD
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/__init__.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/_elffile.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/_manylinux.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/_musllinux.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/_parser.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/_structures.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/_tokenizer.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/markers.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/requirements.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/specifiers.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/tags.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/utils.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/packaging/version.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/vendored/vendor.txt
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel/wheelfile.py
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel-0.45.1.dist-info/INSTALLER
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel-0.45.1.dist-info/METADATA
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel-0.45.1.dist-info/REQUESTED
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel-0.45.1.dist-info/WHEEL
/home/linuxbrew/.linuxbrew/lib/python3.13/site-packages/wheel-0.45.1.dist-info/entry_points.txt

They have been backed up to: /home/anatoli/.cache/Homebrew/Backup
==> Summary
🍺  /home/linuxbrew/.linuxbrew/Cellar/python@3.13/3.13.3_1: 3,159 files, 71.4MB
==> Installing spack
==> Pouring spack--0.23.1.x86_64_linux.bottle.tar.gz
==> Downloading https://formulae.brew.sh/api/formula.jws.json
🍺  /home/linuxbrew/.linuxbrew/Cellar/spack/0.23.1: 12,051 files, 72.2MB
==> Running `brew cleanup spack`...
Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
Error: Too many open files @ rb_sysopen - /etc/ld.so.conf

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@MikeMcQuaid @Bo98 @valeriyvan @abitrolly