Spike analysis software

Inner ear models for Python3

Maps the flow of electricity in the brain. Studies causes of action potentials, and what types of neurotransmitters are released. Studies the impact of damaged neurons, and their impact on neural networks in the brain.

CA1 PV+ fast-firing hippocampal interneuron (Ferguson et al. 2013)

ABF Spike Animator transforms electrophysiological data into an interactive audiovisual experience. It converts action potential signals into sound and animation, making neuronal activity more intuitive to visualize.

CA1 SOM+ (OLM) hippocampal interneuron (Ferguson et al. 2015)

Code for submission of Speiser et al to spike-finder-challenge 2017

Neural recruitment during synchronous multichannel microstimulation (Hokanson et al 2018)

Action potential reconstitution from measured current waveforms (Alle et al. 2009)

Peripheral nerve:Morris-Lecar implementation of (Schwarz et al 1995)

Paradoxical effect of fAHP amplitude on gain in dentate gyrus granule cells (Jaffe & Brenner 2018)

Dipolar extracellular potentials generated by axonal projections (McColgan et al 2017)

A sensorimotor-spinal cord model (Hoshino et al. 2022)

Midbrain torus semicircularis neuron model (Aumentado-Armstrong et al. 2015)

Ventral medial entorhinal cortical stellate neuron model: the role of T-type Ca2+ and persistent Na+ (Topczewska et al., accepted)

Action potential of striated muscle fiber (Adrian et al 1970)

MultiScale Optimized Neuronal Intramembrane Cavitation (SONIC) model (Lemaire et al. 2019)

A Hodgkin-Huxley model implementation for DD2401 Neuroscience at KTH

The ventricular AP and effects of the isoproterenol-induced cardiac hypertrophy (Sengul et al 2020)