Skip to content
@BIMSBbioinfo

BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

Popular repositories Loading

  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 258 34

  2. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 93 16

  3. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 76 23

  4. compgen2021 compgen2021 Public

    R 75 24

  5. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 49 21

  6. flexynesis flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    Python 48 13

Repositories

Showing 10 of 108 repositories
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 93 MIT 16 2 0 Updated Mar 18, 2025
  • ImageArray Public
    R 0 1 0 0 Updated Mar 18, 2025
  • compgen_course_2025_module3 Public

    Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning

    Jupyter Notebook 47 22 0 0 Updated Mar 18, 2025
  • ZarrDataFrame Public
    R 0 MIT 1 0 0 Updated Mar 17, 2025
  • anglemania Public

    Improved feature extraction for scRNA-seq dataset integration.

    R 0 Artistic-2.0 0 19 0 Updated Mar 7, 2025
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    Python 48 13 11 0 Updated Mar 6, 2025
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    Python 2 1 2 0 Updated Mar 3, 2025
  • guix-bimsb Public

    Packages for GNU Guix that have not yet or will not be submitted upstream for various reasons

    Scheme 15 GPL-3.0 4 0 0 Updated Feb 20, 2025
  • guix-bimsb-nonfree Public

    GNU Guix package definitions for proprietary software, or software with unclear licenses.

    Scheme 11 GPL-3.0 3 0 0 Updated Feb 20, 2025
  • flexynesis_manuscript Public

    Manuscript material for Flexynesis

    R 1 0 0 0 Updated Feb 16, 2025