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1. ErasmusMC-Bioinformatics/EMC-MetaMicrobes ErasmusMC-Bioinformatics/EMC-MetaMicrobes Public

   Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

   Nextflow 4 2

2. Cancer_Microbiome_Scripts Cancer_Microbiome_Scripts Public

   This repository contains a collection of scripts used during researching the microbiome in tumours.

   Python

3. NanoCLUST_toolkit NanoCLUST_toolkit Public

   Small programs that enhance NanoCLUST usage and output

   Python 1

4. NanoCLUST_runner NanoCLUST_runner Public

   Python script that runs NanoCLUST on files in a directory with only 1 command.

   Python 1

5. MetONTIIME_extra_diversity MetONTIIME_extra_diversity Public

   Forked from MaestSi/MetONTIIME

   A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework, with extra diversity analysis included

   Nextflow 1