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Kronopt/FastaParser

Problems building v1.1 with conda

conda build is failing to build FastaParser v1.1 because it can t find the docs/history.md file when running setup.py. Because it installs the package directly from pypi instead of the local package, I ...

• Kronopt
·
• 2
·
• Opened 
  on Feb 13, 2020
·
• #7

Kronopt/FastaParser

[Feature] FASTQ parser/writer

Is your feature request related to a problem? FASTQ is as popular as FASTA. FASTQ has a specification, as described here: https://en.wikipedia.org/wiki/FASTQ_format http://maq.sourceforge.net/fastq.shtml ...

enhancement

• Kronopt
·
• Opened 
  on Feb 8, 2020
·
• #5

Kronopt/FastaParser

[Feature] Allow setting of FastaSequence's id and description properties

Is your feature request related to a problem? FastaParser s id and description properties are read only. Describe the solution you d like It might make sense to implement a setter for both properties. ...

enhancement

• Kronopt
·
• 1
·
• Opened 
  on Feb 8, 2020
·
• #4

Kronopt/FastaParser

[Feature] Allow disabling warnings

Is your feature request related to a problem? Sometimes warnings are unnecessary. Describe the solution you d like Implement a way to disable warnings without having to implicitly import the warnings ...

enhancement

• Kronopt
·
• Opened 
  on Feb 8, 2020
·
• #3

Kronopt/FastaParser

[Feature] Show warning if there are characters not in the FASTA specification

Is your feature request related to a problem? Right now warnings are only shown when calling complement (FastaSequence and LetterCode), at_gc_ratio or gc_content (FastaSequence) methods. No warning is ...

enhancement

• Kronopt
·
• Opened 
  on Feb 8, 2020
·
• #2

Kronopt/FastaParser

[Feature] Identify FASTA id's

Is your feature request related to a problem? FastaSequence.id should provide more information on the id. Most FASTA id s are standard and should, therefore, be easy to parse. Sources: https://en.wikipedia.org/wiki/FASTA_format#NCBI_identifiers ...

enhancement

• Kronopt
·
• Opened 
  on Feb 8, 2020
·
• #1

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