University Medicine Essen
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FHIR-PYrate
FHIR-PYrate PublicFHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…
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saros-dataset
saros-dataset PublicSparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
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Body-and-Organ-Analysis
Body-and-Organ-Analysis PublicBOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …
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Repositories
- DeidentiFHIR-Pipeline Public
With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.
- BOA-Profiles Public
- fhir-former Public
FHIR-Former: An open-source framework integrating FHIR healthcare data with large language models for automated clinical predictions and risk assessments.
- FHIR-Converter Public
Thin wrapper around Microsoft FHIR Converter to allow for a standalone FHIR server that provides data conversion operations.
- DeidentiFHIR Public
- saros-dataset Public
Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
- FHIR-PYrate Public
FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.
